Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 5 Aligned Residues 413 % Identity 20% Template c3uagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase Resolution 1.77 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		R	H	I	H	F	V	G	I	G	G	A	G	M	G	G	I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	P	N	P	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	.	H	R	P	E	N	V	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A
Query Conservation																																																					.
Alig confidence																	.																																				.
Template Conservation																	.
Template Sequence		K	N	V	V	I	I	G	L	G	L	T	G	L	S	C	.	V	D	F	F	L	A	R	G	V	T	P	R	V	M	D	T	R	M	T	P	P	G	L	D	K	L	P	E	A	V	E	R	H	T	G	S	L	N	D	E	W	L	M	A	A	D	L	I	V	A	S	P	G	I	A	L	A	H	P	S	L	S	A	A
Template Known Secondary structure										S							.						T	T	T								S	S	S	S		T	T	G	G	G	S		T	T	S					S	S							T	T		S						T	T	S		T	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	A	R	I	P	V	I	R	R	A	E	M	L	A	E	L	M	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L	G	H	G	R	Y	L	I	A	E	A	D	E	S
Query Conservation
Alig confidence																						.																													.	.
Template Conservation																						.																													.	.
Template Sequence		A	D	A	G	I	E	I	V	G	D	I	E	L	F	C	R	E	A	Q	A	.	P	I	V	A	I	T	G	S	N	G	K	S	T	V	T	T	L	V	G	E	M	A	K	A	A	G	V	N	.	.	V	G	V	G	G	N	I	G	L	P	A	L	M	L	L	D	D	E	C	E	L	Y	V	L	E	L	S	S	F
Template Known Secondary structure				T	T																S	.								S	S																T	T			.	.						T	T	S	S		G	G	G	G			T	T
Template Predicted Secondary structure																						.																													.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		179	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		D	A	.	S	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	T	T	T	Y	G	F	S	E	D	A	D
Query Conservation				.
Alig confidence				.																								.																			.	.	.															.	.	.	.	.
Template Conservation																												.																			.	.	.															.	.	.	.	.
Template Sequence		Q	L	E	T	T	S	S	L	Q	A	V	A	A	T	I	L	N	V	T	E	D	H	M	D	R	Y	.	P	F	G	L	Q	Q	Y	R	A	A	L	R	I	Y	E	N	A	K	.	.	.	V	C	V	V	N	A	D	D	A	L	T	M	P	I	.	.	.	.	.	E	R	C	V	S	F	G	V	N	M	G	D	Y
Template Known Secondary structure					T							S									S			G	G	G		.	T	T										G	G	G	T	T		S	.	.	.						T	T		G	G	G				.	.	.	.	.								S	S	S	S	S
Template Predicted Secondary structure																												.																			.	.	.															.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Sequence		H	L	N	H	E	T	W	L	R	V	K	G	E	K	V	L	.	.	.	.	.	.	.	.	N	V	K	E	M	K	L	S	G	Q	H	N	Y	T	N	A	L	A	A	L	A	L	A	D	A	A	G	L	P	R	A	S	S	L	K	A	L	T	T	F	T	G	L	P	H	R	F	E	V	V	L	E	.	.	.	.
Template Known Secondary structure												T	T					.	.	.	.	.	.	.	.		G	G	G		S			S																	T	T																	T	T	S	S						.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.																																																					.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	M	L	F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	V	D	T	L	L	M	L	E	V	Y	P	A	G	E	A	P	I
Query Conservation
Alig confidence		.	.	.	.																											.	.																											.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																											.	.																											.	.	.										.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	H	N	G	V	R	W	I	N	D	S	K	A	T	N	V	G	S	T	E	A	A	L	N	G	L	H	.	.	V	D	G	T	L	H	L	L	L	G	G	D	G	K	S	A	D	F	S	P	L	A	R	Y	L	N	.	.	.	G	D	N	V	R	L	Y	C	F	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.		T	T							T	T			S									T	T			.	.		S	S								S	B		T	T				G	G	G	G	G	G	S		.	.	.	S	T	T							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																											.	.																											.	.	.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
						309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360				.	.	.	.	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.								.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.
Query Sequence		P	G	A	D	S	R	S	L	C	R	T	I	R	G	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	.	.	.	.	.	.	.	N	I	G	K	I	A	R	S	L	A	E	I	K	L	K
Query Conservation																																																			.	.	.	.	.	.	.
Alig confidence		.															.	.	.	.																															.	.	.	.	.	.	.
Template Conservation		.															.	.	.	.
Template Sequence		.	G	R	D	G	A	Q	L	A	A	L	R	P	E	V	.	.	.	.	A	E	Q	T	E	T	M	E	Q	A	M	R	L	L	A	P	R	V	Q	P	G	D	M	V	L	L	S	P	A	C	A	S	L	D	Q	F	K	N	F	E	Q	R	G	N	E	F	A	R	L	A	K	E
Template Known Secondary structure		.	S	T	T						T	T	S	G	G	G	.	.	.	.					S	S									G	G	G			T	T								S	S	B	S	T	T	T	S	S	S
Template Predicted Secondary structure		.															.	.	.	.
Template SS confidence
			370	.	.	.	.	.	.	.	.	.	380	.	.	.					.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.