Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 6 Aligned Residues 427 % Identity 22% Template c3lk7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a Resolution 1.50 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																								.	.	.																						.	.
Query SS confidence																																								.	.	.																						.	.
Query Sequence		R	V	R	H	I	H	F	V	G	I	G	G	A	G	M	G	G	I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	P	N	P	.	.	.	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	.	.	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N
Query Conservation																																								.	.	.																						.	.
Alig confidence																			.																					.	.	.																						.	.
Template Conservation																			.
Template Sequence		E	N	K	K	V	L	V	L	G	L	A	R	S	G	E	A	A	.	A	R	L	L	A	K	L	G	A	I	V	T	V	N	D	G	K	P	F	D	E	N	P	T	A	Q	S	L	L	E	E	G	I	K	V	V	C	G	S	H	P	L	E	L	L	D	E	D	F	C	Y	X	I	K	N	P	G	I	P	Y	N	N
Template Known Secondary structure		T	T									T	T	T					.							T	T								S	S		G	G	G										T	T						S				G	G	G	G	G	S									T	T	S		T	T	S
Template Predicted Secondary structure																			.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	I	V	A	A	H	E	A	R	I	P	V	I	R	R	A	E	M	L	A	E	L	M	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L	G	H	G	R	Y	L	I
Query Conservation
Alig confidence																												.
Template Conservation																												.
Template Sequence		P	X	V	K	K	A	L	E	K	Q	I	P	V	L	T	E	V	E	L	A	Y	L	V	S	E	S	.	Q	L	I	G	I	T	G	S	N	G	K	T	T	T	T	T	X	I	A	E	V	L	N	A	G	G	Q	R	G	L	L	A	G	N	I	G	F	P	A	S	E	V	V	Q	A	A	N	D	K	D	T	L	V
Template Known Secondary structure										T	T																S	.								S	S																T	T								T	S	S	S						T	T	T			T	T
Template Predicted Secondary structure																												.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		173	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		A	E	A	D	E	S	D	.	A	S	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	T	T	T	Y	G
Query Conservation									.
Alig confidence									.																									.
Template Conservation																																		.
Template Sequence		X	E	L	S	S	F	Q	L	X	G	V	K	E	F	R	P	H	I	A	V	I	T	N	L	X	P	T	H	L	D	Y	H	.	G	S	F	E	D	Y	V	A	A	K	W	N	I	Q	N	Q	X	S	S	S	D	F	L	V	L	N	F	N	Q	G	I	S	K	E	L	A	K	T	T	K	A	T	I	V	P	F	S
Template Known Secondary structure										T	T		S	S				S									S							.	S	S										G	G	G	T	T			T	T	S						T	T	S								T	T		S	S
Template Predicted Secondary structure																																		.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F	D	F	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		T	T	E	K	V	D	G	A	Y	V	Q	.	.	.	.	.	.	.	D	K	Q	L	F	Y	K	G	E	N	I	X	S	V	D	D	I	G	V	P	G	S	H	N	V	E	N	A	L	A	T	I	A	V	A	K	L	A	G	I	S	N	Q	V	I	R	E	T	L	S	N	F	G	G	V	K	H	R	L	Q	S	L
Template Known Secondary structure		S	S	S			S	S					.	.	.	.	.	.	.	T	T					T	T						G	G	G	S	S	S		S																		T																	T	T	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.								.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	M	L	F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	V	D	T	L	L	M	L	E	V	Y	P
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.																									.	.	.	.																					.	.	.																.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.																									.	.	.	.																					.	.	.																.	.	.	.
Template Sequence		G	K	.	.	.	.	.	.	.	.	V	H	G	I	S	F	Y	N	D	S	K	S	T	N	I	L	A	T	Q	K	A	L	S	G	.	.	.	.	F	D	N	T	K	V	I	L	I	A	G	G	L	D	R	G	N	E	F	D	.	.	.	E	L	I	P	D	I	T	G	L	K	H	X	V	V	L	.	.	.	.
Template Known Secondary structure				.	.	.	.	.	.	.	.		T	T							T	T			S										T	.	.	.	.	S		G	G	G								S			S				G	.	.	.	G	G					T	T		S						.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.																									.	.	.	.																					.	.	.																.	.	.	.
Template SS confidence
		318	.									320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.								.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.
Query Sequence		A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	I	R	G	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	.	.	.	.	.	.	.	G	N	I	G	K	I	A	R	S	L	A	E	I	K	L	K
Query Conservation																																																								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																.																																.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																.
Template Sequence		.	.	.	.	.	.	.	G	E	S	A	S	R	V	K	R	A	A	Q	K	A	G	.	V	T	Y	S	D	A	L	D	V	R	D	A	V	H	K	A	Y	E	V	A	Q	Q	G	D	V	I	L	L	S	P	A	N	A	S	W	D	X	Y	K	N	F	E	V	R	G	D	E	F	I	D	T	F	E	S
Template Known Secondary structure		.	.	.	.	.	.	.	S	T	T											T	T	.							S	S														T	T								S	S		S	T	T	T	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																.
Template SS confidence
									379	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.