 |
Job Description | P17952 | Confidence | 97.58% | Date | Thu Jan 5 11:36:25 GMT 2012 |
Rank | 53 | Aligned Residues | 110 |
% Identity | 15% | Template | c3l6dB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:putative oxidoreductase; |
PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
|
Resolution | 1.90 Å |
|
 |
  |   |
21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | I | H | F | V | G | I | G | G | A | G | M | G | G | I | A | E | V | L | A | N | E | G | Y | Q | I | S | G | S | D | L | A | P | N | P | V | T | Q | Q | L | M | N | L | G | A | T | I | Y | F | N | H | R | P | E | N | V | R | D | A | S | V | V | V | V | S | S | A | I | S | A | D | N | P | E | I | V | A | A | H | E |
Query Conservation |   |
  |
|   |   |
|
|   |
|
|   |
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
|   |   |   |   |
|   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |
|   |
|
| . |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   | . |   |   |   |   |
|   |   |   |   |
|
|   |
|
|
|   | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
D | V | S | V | I | G | L | G | A | X | G | . |
T | I | X | A | Q | V | L | L | K | Q | G | K | R | V | A | I | W | N | R | S | P | . |
G | K | A | A | A | L | V | A | A | G | A | H | L | C | . |
E | S | V | K | A | A | L | S | A | S | P | A | T | I | F | V | . |
. |
. |
L | L | D | N | H | A | T | H | E | V | L | G |
Template Known Secondary structure |   |
S |  |  |  |  |
|
| S |  |  |  | . |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| S |
|  | . |  |  |  |  |  |  |  |  | T | T |
|  |  |
| . | S | S |  |  |  |  |  |  |  | S | S |  |  |  |  |
| . | . | . |
| S | S |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | |
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
. | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
|
|
. | . | . | . | . | . | . | 80 | . | . | . | . |
  |
  |   |
101 | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | R | I | P | V | I | R | R | A | E | M | L | A | E | L | M | R | F | R | H | G | I | A | I | A | G | T | H | G | K | T | T | T | T | A | M | V | S | S | I | Y | A | E | A | G |
Query Conservation |   |
  |   |
|   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |
|
Alig confidence |   |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
X | P | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
V | A | R | A | L | A | H | R | T | I | V | D | Y | T | T | N | A | Q | D | E | G | L | A | L | Q | G | L | V | N | Q | A | G | G |
Template Known Secondary structure |   |
S | T | T | . | . | . | . | . | . | . | . | . |  |  |  |  |  | T | T |
|  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
 |  |  | . | . | . | . | . | . | . | . | . |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | |
|
|
|
|
|
|
|
|
. | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|