Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 4 Aligned Residues 442 % Identity 26% Template c3hn7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution Resolution 1.65 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																									.
Query SS confidence																																			.																									.
Query Sequence		R	H	I	H	F	V	G	I	G	G	A	G	M	G	G	I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	.	P	N	P	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	.	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A
Query Conservation																																			.																									.
Alig confidence																																			.																									.
Template Conservation
Template Sequence		X	H	I	H	I	L	G	I	C	G	T	F	X	G	S	L	A	L	L	A	R	A	L	G	H	T	V	T	G	S	D	A	N	I	Y	P	P	X	S	T	Q	L	E	Q	A	G	V	T	I	E	E	G	Y	L	I	A	H	L	Q	P	A	P	D	L	V	V	V	G	N	A	X	K	R	G	X	D	V	I	E	Y
Template Known Secondary structure								T	T	T	S													T	T								S				T	T								T	T						S			G	G	G	G		S			S						T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																					.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	H	E	A	R	I	P	V	I	R	R	A	E	M	L	A	E	L	M	.	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	L	D	T	G	L	R	Y	T	S	G	P	Q	F	L	S	E	Q	V	L	Q	S	R	H	V	I	A	V	A	G	T	H	G	K	T	T	T	T	T	X	L	A	W	I	L	H	Y	A	G	I	D	A	G	F	L	I	G	G	V	P	L	V	N	T	T	D	T	N	L	Q	Q	V	F	A	H	S	S	Y	L	G
Template Known Secondary structure						T														T	G	G	G	S								S	S																T	T								S			B				S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
								163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.								.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	R	L	G	H	G	R	Y	L	I	A	E	A	D	E	S	D	A	S	.	.	.	.	.	.	.	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M
Query Conservation		.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																				.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		T	E	K	D	D	S	D	N	S	V	N	T	G	Y	F	V	I	E	A	D	E	Y	D	S	A	F	F	D	K	R	S	K	F	V	H	Y	R	P	R	T	A	I	L	N	N	L	E	F	D	D	L	D	A	I	Q	T	.	.	.	.	.	.	.	Q	F	H	H	X	V	R	X	I	P	S	T	G	K	I	I	X
Template Known Secondary structure						S	S		T	T												S				B	T	T	B											S																		.	.	.	.	.	.	.							T	T	S		T	T	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.								.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	.	.	T	T	T	Y	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		P	A	A	T	I	S	L	E	D	T	L	A	K	G	V	W	T	P	I	W	R	T	S	V	I	D	N	S	S	D	W	Q	A	E	L	I	S	A	D	G	S	Q	F	T	V	S	F	N	D	N	K	E	A	T	A	L	V	N	W	S	X	S	G	L	H	N	V	N	N	A	L	V	A	I	A	A	A	Y	N	I
Template Known Secondary structure			S	S										T				S													S								T	T	T	T							T	T											S			S																	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	M	L	F	Q	P	H	R	F	T	.	R
Query Conservation																																																																																.
Alig confidence																											.	.	.	.	.	.	.	.	.																																													.
Template Conservation																											.	.	.	.	.	.	.	.	.
Template Sequence		G	V	S	V	K	T	A	C	A	A	L	S	A	F	A	G	I	K	R	R	X	E	L	I	G	.	.	.	.	.	.	.	.	.	D	V	N	D	I	L	V	F	D	D	F	A	H	H	P	T	A	I	T	T	T	L	D	G	A	K	K	K	L	A	D	R	R	L	W	A	I	I	E	P	R	S	N	T	X	K
Template Known Secondary structure		T												T				B	T	T	S	S					.	.	.	.	.	.	.	.	.			T	T										S																T	T	S												S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.										.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	V	D	T	L	L	M	L	E	V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	I	R	G	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G
Query Conservation
Alig confidence																																													.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		X	G	I	H	Q	D	S	L	A	Q	S	A	T	L	A	D	H	T	L	W	Y	E	P	T	G	L	E	W	G	L	K	E	V	I	D	N	A	T	I	A	N	P	S	.	.	.	.	I	G	S	Q	Q	V	L	S	S	V	D	D	I	I	K	H	I	C	T	H	A	K	A	G	D	A	I	V	I	X	S	N	G
Template Known Secondary structure			S			T	T						T	T	T	S	S								T	T				S													G	G	.	.	.	.	G							S															T	T								S	S
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.					.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	G	K	I	A	R	S	L	A	E	I	K	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	E	G	I	H	Q	R	L	L	T	A	L	G	N
Template Known Secondary structure			G	G	G
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500