Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 7 Aligned Residues 302 % Identity 30% Template c3eagA_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides Resolution 2.55 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																			.																										.	.
Query SS confidence																																			.																										.	.
Query Sequence		R	H	I	H	F	V	G	I	G	G	A	G	M	G	G	I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	.	P	N	P	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	R	.	.	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V
Query Conservation																																			.																										.	.
Alig confidence																																			.																										.	.
Template Conservation
Template Sequence		K	H	I	H	I	I	G	I	G	G	T	F	X	G	G	L	A	A	I	A	K	E	A	G	F	E	V	S	G	C	D	A	K	X	Y	P	P	X	S	T	Q	L	E	A	L	G	I	D	V	Y	E	G	F	D	A	A	Q	L	D	E	F	K	A	D	V	Y	V	I	G	N	V	A	K	R	G	X	D	V	V	E
Template Known Secondary structure								S			S													T	T								S	S			T	T								T	T						S			G	G	G	G	G	S				S						T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																																							.	.	.	.	.	.	.
Query SS confidence																				.																																																							.	.	.	.	.	.	.
Query Sequence		A	A	H	E	A	R	I	P	V	I	R	R	A	E	M	L	A	E	.	L	M	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L	G	H	G	.	.	.	.	.	.	.
Query Conservation																				.																																																							.	.	.	.	.	.	.
Alig confidence																				.																																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	L	N	L	G	L	P	Y	I	S	G	P	Q	W	L	S	E	N	V	L	H	H	H	W	V	L	G	V	A	G	T	H	G	K	T	T	T	A	S	X	L	A	W	V	L	E	Y	A	G	L	A	P	G	F	L	I	G	G	V	P	E	N	F	G	V	S	A	R	L	P	Q	T	P	R	Q	D	P	N	S
Template Known Secondary structure						T	T														T	G	G	G	S							S	S	S																T	T								S	S			T	T	S	S		S								S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
				169	170	.	.	.	.	.	.	.	.	.	180	.								.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.														.	.	.	.	.	.	.
Query SS confidence		.	.														.	.	.	.	.	.	.
Query Sequence		.	.	R	Y	L	I	A	E	A	D	E	S	D	A	S	.	.	.	.	.	.	.	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L
Query Conservation		.	.														.	.	.	.	.	.	.
Alig confidence		.	.														.	.	.	.	.	.	.																							.
Template Conservation																																														.
Template Sequence		Q	S	P	F	F	V	I	E	A	D	E	Y	D	T	A	F	F	D	K	R	S	K	F	V	H	Y	R	P	R	T	A	V	L	N	N	L	E	F	D	H	A	D	I	F	.	A	D	L	G	A	I	Q	T	Q	F	H	Y	L	V	R	T	V	P	S	E	G	L	I	V	C	N	G	R	Q	Q	S	L	Q	D	T
Template Known Secondary structure													S				T	T					G	G	G	G	S			S												T	T	T	S	.	S	S													T	T	S		T	T	S						S	S
Template Predicted Secondary structure																																														.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	R	V	G	R	Q	T	T	T	Y	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E
Query Conservation
Alig confidence																			.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		L	D	K	G	C	W	T	P	V	E	K	F	G	T	E	H	G	.	.	.	.	W	Q	A	G	E	A	N	A	D	G	S	F	D	V	L	L	D	G	K	T	A	G	R	V	K	W	D	L	X	G	R	H	N	R	X	N	A	L	A	V	I	A	A	A	R	H	V	G	V	D	I	Q	T	A	C	E	A	L	G
Template Known Secondary structure			T	T				S						S	S	S	S	S	.	.	.	.								T	T	S							T	T												S																		T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	Q	G	T	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	K	N	V	K	R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions