Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 10 Aligned Residues 369 % Identity 24% Template c2wtzC_ PDB info PDB header:ligase Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate- PDBTitle: mure ligase of mycobacterium tuberculosis Resolution 3.00 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																											.														.						.	.	.
Query SS confidence																																																											.														.						.	.	.
Query Sequence		I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	P	N	P	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	.	N	P	E	I	V	A	A	H	E	A	R	I	P	.	V	I	R	R	A	.	.	.
Query Conservation																																																											.														.						.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																									.														.						.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	L	A	D	Q	V	G	A	A	L	A	E	G	V	T	E	D	R	T	V	T	.	.	.	.	.	.	.	.	.	.	G	V	T	L	R	A	Q	D	V	S	P	G	D	L	F	A	A	L	T	G	S	T	T	H	G	A	R	H	V	G	D	A	I	A	R	G	A	V	A	V	L	T	D	P	A	G	V
Template Known Secondary structure									T	T				S				T	T	T					.	.	.	.	.	.	.	.	.	.				S		G	G	G			T	T							B		S	S		B	G	G	G	G							T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.											.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
																												110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	L	A	E	L	M	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation																																																																			.
Template Sequence		A	E	I	A	G	R	A	A	V	P	V	L	V	H	P	A	P	R	G	V	L	G	G	L	A	A	T	V	Y	G	H	P	S	E	R	L	T	V	I	G	I	T	G	T	S	G	K	T	T	T	T	Y	L	V	E	A	G	L	R	A	A	G	R	V	A	.	G	L	I	G	T	I	G	I	R	V	G	G	A	D
Template Known Secondary structure						S			S	S						S	S	S												T	T		G	G	G	S	S							S	S	S																T	T				.				S	S	S					T	T
Template Predicted Secondary structure																																																																			.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.
		164	.																					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																							.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																							.
Query Sequence		R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	G	R	Y	L	I	A	E	A	D	E	S	D	A	.	.	.	S	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	.	H
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																							.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																								.															.
Template Conservation																																																																	.
Template Sequence		L	P	S	A	L	T	T	P	E	A	P	T	L	Q	A	M	L	A	A	M	V	E	R	G	V	D	T	V	V	M	E	V	S	S	H	A	L	A	L	G	R	V	D	G	T	R	F	A	V	G	A	F	T	N	L	S	R	D	H	L	D	F	H	.	P	S	M	A	D	Y	F	E	A	A	S	L	F	D	P	D
Template Known Secondary structure					S	S	S	S																T	T																T	T	T	T	T				S									S			T	T	T	S	.	S	S									T	T	T		T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	T	T	T	Y	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	.	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		S	A	L	R	A	R	T	A	V	V	C	I	D	D	D	A	G	R	A	M	A	A	R	A	A	D	A	I	T	V	S	A	A	D	R	P	A	H	W	R	A	T	D	V	A	P	T	D	A	G	G	Q	Q	F	T	A	I	D	P	A	G	V	G	H	H	I	G	I	R	L	P	G	R	Y	N	V	A	N	C	L
Template Known Secondary structure		S	T	T			S							S	S											S	S						S	S	S	S			S										T	T	T									T	T	S								S			S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	M	L
Query Conservation
Alig confidence																										.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																										.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		V	A	L	A	I	L	D	T	V	G	V	S	P	E	Q	A	V	P	G	L	R	E	I	R	.	V	P	G	R	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	F	L	A	L	V	D	Y	A	H	K	P	E	A	L	R	S	V	L	T	T	L	A	.	.	.	.	.	H	R	L	A	V	V
Template Known Secondary structure										T	T															.		T	T	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S										T	T		.	.	.	.	.
Template Predicted Secondary structure																										.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.															380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.						.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	V	D	T	L	L	M	L	E	V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	I	R	G	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Sequence		F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	M	G	R	I	A	D	L	V	V	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	T	A	I	R	R	E	I	L	A	.	.	.	.	Q	V	V	E	I	A	D	R	R	D	A	I	R	H	A	V	A	W	A	R	P	G	D
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.							S														T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template SS confidence
		418	.															420	.	.	.	.	.	.	.	.	.	430	.	.														.	.	.	.	.	.	.	440	.	.	.					.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		459	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	V	Q	G	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	L	I	A	G	K	G
Template Known Secondary structure							S
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.