Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 1 Aligned Residues 476 % Identity 96% Template c2f00A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	T	Q	Q	L	A	K	L	R	S	I	V	P	E	M	R	R	V	R	H	I	H	F	V	G	I	G	G	A	G	M	G	G	I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	P	N	P	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	R	D	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	N	T	Q	Q	L	A	K	L	R	S	I	V	P	E	X	R	R	V	R	H	I	H	F	V	G	I	G	G	A	G	X	G	G	I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	P	N	P	V	T	Q	Q	L	X	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	R	D	A	S
Template Known Secondary structure											T	T	T	S				T	T								T	T	T	S	T	T											T	T								S	S											T	T					S	S			G	G	G	G	T	T		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A	H	E	A	R	I	P	V	I	R	R	A	E	M	L	A	E	L	M	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A	H	E	A	R	I	P	V	I	R	R	A	E	X	L	A	E	L	X	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	X	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G
Template Known Secondary structure							T	T			T	T										T	T															T	T	S							S	S	S																T	T												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	A	R	L	G	H	G	R	Y	L	I	A	E	A	D	E	S	D	A	S	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	A	R	L	G	H	G	R	Y	L	I	A	E	A	D	E	S	D	A	S	F	L	H	L	Q	P	X	V	A	I	V	T	N	I	E	A	D	H	X	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	X	C	V	D	D	P	V	I	R	E	L	L
Template Known Secondary structure								S	S	S									T	T	S	G	G	G	G				S									S		S	G	G	G	T	T	T														T	T	S		T	T							T	T	S							G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	V	G	R	Q	T	T	T	Y	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	V	G	R	Q	T	T	T	Y	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	X	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S
Template Known Secondary structure		G	G			S							S	S	T	T		S										T	T									T	T	S								S	S		S																		T												T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	M	L	F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	X	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	X	L	F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q
Template Known Secondary structure					B	T	T	S	S								S	S	S	S	S	S		S	S											S													T	T			S	S									B						T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	L	L	M	L	E	V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	I	R	G	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	N	I	G	K	I	A	R	S	L	A	E	I	K	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		V	D	T	L	L	X	L	E	V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	.	.	.	.	.	.	.	R	T	D	P	I	L	V	P	D	P	A	R	V	A	E	X	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	N	I	G	K	I	A	R	S	L	A	E	I	K	L
Template Known Secondary structure		S	S								B		S	S	S				T	T	S	S					T	.	.	.	.	.	.	.	T									S	S							G	G	G			S									S	T	T											T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.								.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		481	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		481	.	.