Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 11 Aligned Residues 378 % Identity 19% Template c2am1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1 Resolution 2.50 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.															.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query SS confidence																																				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query Sequence		H	R	P	E	N	V	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A	H	E	A	R	I	P	.	V	I	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	M	L	A	E	L	M	R	.	.	.	.	.	.	F	R	H	G	I	A	I	A	G	T	H	G
Query Conservation																																				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Alig confidence																																				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	S	R	L	I	G	T	G	D	L	F	V	P	L	K	G	A	R	D	G	H	D	F	I	E	T	A	F	E	N	G	A	A	V	T	L	S	E	K	E	V	S	N	H	P	Y	I	L	V	D	D	V	L	T	A	F	Q	S	L	A	S	Y	Y	L	E	K	T	T	V	D	V	F	A	V	T	G	S	N	G
Template Known Secondary structure		S		G	G	G			T	T							B	S	S	S	B	G	G	G	G								T		S					S	S				S	S						S																													S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																						.	.	.	.																.	.	.	.	.
Query SS confidence																																						.	.	.	.																.	.	.	.	.
Query Sequence		K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L	.	.	.	.	G	H	G	R	Y	L	I	A	E	A	D	E	S	D	A	.	.	.	.	.	S	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M
Query Conservation																																						.	.	.	.																.	.	.	.	.
Alig confidence																					.																	.	.	.	.																.	.	.	.	.
Template Conservation																					.
Template Sequence		K	T	T	T	K	D	X	L	A	H	L	L	S	T	R	Y	K	T	Y	.	K	T	Q	G	N	Y	N	N	E	I	G	L	P	Y	T	V	L	H	X	P	E	G	T	E	K	L	V	L	E	X	G	Q	D	H	L	G	D	I	H	L	L	S	E	L	A	R	P	K	T	A	I	V	T	L	V	G	E	A	H	L
Template Known Secondary structure		S	S											T	T	T	S				.				T	T			S	T	T								T			T	T											S	S	T	T												S										S	S
Template Predicted Secondary structure																					.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	T	T	T	Y	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E
Query Conservation
Alig confidence						.																															.	.	.	.																																									.
Template Conservation						.																															.	.	.	.																																									.
Template Sequence		A	F	F	K	.	D	R	S	E	I	A	K	G	K	X	Q	I	A	D	G	X	A	S	G	S	L	L	L	A	P	A	D	P	I	V	.	.	.	.	E	D	Y	L	P	I	D	K	K	V	V	R	F	G	Q	G	A	E	L	E	I	T	D	L	V	E	R	K	D	S	L	T	F	K	A	N	F	L	E	Q	.
Template Known Secondary structure		T	T			.										G	G	G	G	T	T			T	T							S		G	G	G	.	.	.	.	G	G	G			S	S	S						S	T	T	S	S	B									S	S							T	T		S	S	.
Template Predicted Secondary structure						.																															.	.	.	.																																									.
Template SS confidence
		190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D
Query Conservation
Alig confidence		.	.																																																				.	.	.	.	.	.	.	.
Template Conservation		.	.																																																				.	.	.	.	.	.	.	.
Template Sequence		.	.	A	L	D	L	P	V	T	G	K	Y	N	A	T	N	A	X	I	A	S	Y	V	A	L	Q	E	G	V	S	E	E	Q	I	R	L	A	F	Q	H	L	E	L	T	R	N	R	T	E	W	K	K	A	.	.	.	.	.	.	.	.	A	N	G	A	D	I	L	S	D	V	Y	N	A	N	P	T	A	X	K
Template Known Secondary structure		.	.					S	S																			T	T										G	G	G								S						.	.	.	.	.	.	.	.	T	T	T								S			S
Template Predicted Secondary structure		.	.																																																				.	.	.	.	.	.	.	.
Template SS confidence
				264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.									.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400			.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure															.	.											.	.																		.	.																																.	.	.
Query SS confidence															.	.											.	.																		.	.																																.	.	.
Query Sequence		A	T	I	K	A	A	R	A	G	W	P	D	K	.	.	N	L	V	M	L	F	Q	P	H	R	.	.	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	.	.	V	D	T	L	L	M	L	E	V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	I	R	G	.	.	.
Query Conservation															.	.											.	.																		.	.																																.	.	.
Alig confidence															.	.											.	.																		.	.								.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	L	E	T	F	S	A	I	P	A	N	E	G	G	K	K	I	A	V	L	A	D	X	K	E	L	G	D	Q	S	V	Q	L	H	N	Q	X	I	L	S	L	S	P	D	V	L	D	I	V	I	F	Y	.	.	.	.	.	.	.	.	.	.	.	G	E	D	I	A	Q	L	A	Q	L	A	S	Q	X	F	P
Template Known Secondary structure								T	T	S				S	S															T	T								G	G	G	G			T	T	T		S						.	.	.	.	.	.	.	.	.	.	.		S	T	T											S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.												.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
						432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.			.	.	470	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																					.	.
Query SS confidence		.	.	.	.																																					.	.
Query Sequence		.	.	.	.	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	N	.	.	I	G	K	I	A	R	S	L	A
Query Conservation		.	.	.	.																																					.	.
Alig confidence		.	.	.	.																																					.	.
Template Conservation
Template Sequence		I	G	H	V	Y	Y	F	K	K	T	E	D	Q	D	Q	F	E	D	L	V	K	Q	V	K	E	S	L	G	A	H	D	Q	I	L	L	K	G	S	N	S	X	N	L	A	K	L	V	E	S	L	E
Template Known Secondary structure		T	T							B	S	S	S		B	T														T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.