 |
| Job Description | P17952 | | Confidence | 96.18% | Date | Thu Jan 5 11:36:25 GMT 2012 |
| Rank | 229 | Aligned Residues | 69 |
| % Identity | 19% | Template | c1ur5C_ |
| PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:malate dehydrogenase; |
PDBTitle: stabilization of a tetrameric malate dehydrogenase by2 introduction of a disulfide bridge at the dimer/dimer3 interface
|
| Resolution | 1.75 Å |
|
| | |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
|
|  | | | | | |  |  | | | | | | | | | | | | |
|
|
| . | | | | | | |
|
|
|
| | | | | | | | | . | . | . | . | . | . | . | . | . |
|
|
| | | | |
|
|
| | | |
|
|
|
|
| | | | |
|
|
|
|
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
R | H | I | H | F | V | G | I | G | G | A | G | M | G | G | I | A | E | V | L | A | N | E | G | Y | . |
Q | I | S | G | S | D | L | A | P | N | P | V | T | Q | Q | L | M | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | G | A | T | I | Y | F | N | H | R | P | E | N | V | R | D | A | S | V | V | V | V | S | S | A | I | S |
| Query Conservation | |
| |
| | |
|
| |
|
| |
| |
| |
|
| | |
| | | |
| | . | |
| | | |
| | | | | | | | | |
| | | . | . | . | . | . | . | . | . | . | |
|
| | | | | | | | | | | | | | |
| |
|
| |
|
|
|
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
|
| |
|
|
|
|
| |
|
| | . | | |
| | |
| | | | |
| |
|
| |
| |
|
| | | | | | |
| | | |
|
| | | | | | | | | | | | |
| | | | | | | | |
| | |
|
|
|
|
|
| |
|
| |
|
| Template Sequence | |
K | K | I | S | I | I | G | A | G | F | V | G | S | . |
T | T | A | H | W | L | A | A | K | E | L | G | D | I | V | L | L | D | I | V | E | G | V | P | Q | G | K | A | L | D | L | Y | E | A | S | P | I | E | G | F | D | V | R | V | T | G | T | N | N | Y | A | D | T | A | N | S | D | V | I | V | V | T | S | G | A | R |
| Template Known Secondary structure | |
| | | | | |
|
| S | | | | | . | | | | | | | | | T | T |
| S | | | | | |
| S | S | T | T | | | | | | | | | | | T | T | | | | | T |
|
|
|
| | | | | S |
| G | G | G | G | T | T |
| S | | | | |
|
|
|
|
|
| Template Predicted Secondary structure | |
| | | | | |
|
|
| | | | | . | | | | | | | | |
|
|
|
| | | | | | |
|
| | | | | | | | | | | | | | | | |
|
|
|
|
| | | | | |
|
|
| | | | |
|
|
|
| | | | |
|
|
|
|
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | |
. | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
