 |
| Job Description | P17952 | | Confidence | 95.62% | Date | Thu Jan 5 11:36:25 GMT 2012 |
| Rank | 318 | Aligned Residues | 66 |
| % Identity | 15% | Template | c1gv1D_ |
| PDB info |
PDB header:oxidoreductase | Chain: D: PDB Molecule:malate dehydrogenase; |
PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases
|
| Resolution | 2.5 Å |
|
| | |
21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
|  | | | | | |  |  | | | | | | | | | | | | |
|
| . | . |
| | | | | | |
|
|
|
| | | | | | | | | . | . | . | . | . | . | . | . | . |
|
|
| | | | |
|
|
| | | |
|
|
|
|
| | | | |
|
|
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
H | I | H | F | V | G | I | G | G | A | G | M | G | G | I | A | E | V | L | A | N | E | G | . |
. |
Y | Q | I | S | G | S | D | L | A | P | N | P | V | T | Q | Q | L | M | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | G | A | T | I | Y | F | N | H | R | P | E | N | V | R | D | A | S | V | V | V | V | S | S | A |
| Query Conservation | |
|
| | |
|
| |
|
| |
| |
| |
|
| | |
| | | |
| . | . | | |
| | | |
| | | | | | | | | |
| | | . | . | . | . | . | . | . | . | . | |
|
| | | | | | | | | | | | | | |
| |
|
| |
|
|
|
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
| |
|
|
|
|
| |
|
| | . | | |
| | |
| | | | | | | |
|
| |
| |
| | | | | | | |
| | | |
|
| | | | | | | | | | | | |
| | | | |
| | | |
| |
|
|
|
|
|
|
|
|
|
|
| Template Sequence | |
K | I | T | V | I | G | A | G | N | V | G | A | . |
T | T | A | F | R | I | A | D | K | K | L | A | R | E | L | V | L | L | D | V | V | E | G | I | P | Q | G | K | G | L | D | M | Y | E | T | G | P | V | G | L | F | D | T | K | I | T | G | S | N | D | Y | A | D | T | A | D | S | D | I | V | I | I | T | A | G |
| Template Known Secondary structure | |
| | | | |
|
| S | | | | | . | | | | | | | | | T | T |
|
| S | | | | | |
| S | S | S | S | | | | | | | | | | | T | T | | | | | T |
|
|
| | | | | | S |
| G | G | G | S | T | T |
| S | | | | |
|
|
|
| Template Predicted Secondary structure | |
| | | | |
|
|
| | | | | . | | | | | | | | |
|
|
|
|
| | | | | | |
|
| | | | | | | | | | | | | | | | |
|
|
|
|
|
| | | | |
|
|
| | | | |
|
|
|
| | | | | |
| |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
2 | . | . | . | . | . | . | . | 10 | . | . | . | |
. | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
