Job Description P17952 Confidence 97.32% Date Thu Jan 5 11:36:25 GMT 2012 Rank 83 Aligned Residues 127 % Identity 16% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.																					.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																												.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence																												.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		R	H	I	H	F	V	G	I	G	G	A	G	M	G	G	I	A	E	V	L	A	N	E	G	Y	Q	.	I	S	G	S	D	L	A	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	.	.
Query Conservation																												.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence																	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																	.
Template Sequence		A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	.	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G	K	S	L	S	E	N	E	I
Template Known Secondary structure										S							.								T									S	S	S	S		S	T					T	S		T	T	T	S														T	T	T						S			B	S	T	T	S	B
Template Predicted Secondary structure																	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
									77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.																	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	N	P	E	I	V	A	A	H	E	A	R	I	P	.	V	I	R	R	A	E	M	L	A	E	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T
Query Conservation		.	.	.	.	.	.	.																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G	L	P	E	P	K	T	D	D	I	F	Q	G	L	T	Q	D	Q	G	F	Y	T	S	K	D	F	L	P	L	V	A	K	S	S	K	A	G	M	C	A	C	H	S	P	L	P	S	I	R	G	A	V	I	V	L	G	A	G	D	.	.	.	.
Template Known Secondary structure									T	T																	G	G	G	T	T			T	T	T	T																	T	T	T		S	S									S								S		.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		T	T	A	M	V	S	S	I	Y	A	E	A	G	.	L	D	P	T	F	V
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		T	A	F	D	C	A	T	S	A	L	R	C	G	A	R	R	V	F	L	V
Template Known Secondary structure													T	T		S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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