Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 12 Aligned Residues 398 % Identity 18% Template c1gg4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution Resolution 2.30 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																											.																.	.	.	.	.	.	.
Query SS confidence																																																											.																.	.	.	.	.	.	.
Query Sequence		I	A	E	V	L	A	N	E	G	Y	Q	I	S	G	S	D	L	A	P	N	P	V	T	Q	Q	L	M	N	L	G	A	T	I	Y	F	N	H	R	P	E	N	V	R	D	A	S	V	V	V	V	S	S	A	I	S	A	D	.	N	P	E	I	V	A	A	H	E	A	R	I	P	V	I	.	.	.	.	.	.	.
Query Conservation																																																											.																.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																									.																.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	Q	L	T	D	I	L	N	G	E	L	Q	G	A	D	I	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	T	T	D	T	R	K	L	T	P	G	C	L	F	V	A	L	K	G	E	R	F	D	A	H	D	F	A	D	Q	A	K	A	G	G	A	G	A	L	L	V	S	R	P	L	D
Template Known Secondary structure									T	T					S						S	.	.	.	.	.	.	.	.	.	.	.	.	.				S		G	G	G			T	T							B		S	S		B	T	T	T	T							T	T							S	S			S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.														.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
																	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	A	E	M	L	A	E	L	M	R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	A	R	L	.	.	.	.	G	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.																	.	.	.	.
Template Conservation																																																											.
Template Sequence		I	D	L	P	Q	L	I	V	K	D	T	R	L	A	F	G	E	L	A	A	W	V	R	Q	Q	V	P	A	R	V	V	A	L	T	G	S	S	G	K	T	S	V	K	E	X	T	A	A	I	L	S	Q	C	G	N	T	L	.	Y	T	A	G	N	L	N	N	D	I	G	V	P	X	T	L	L	R	L	T	P	E
Template Known Secondary structure			S	S						S																	S										S	S														T	T	T	S				.				T	T			S	T	T							T	T			T	T
Template Predicted Secondary structure																																																											.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		168	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		G	R	Y	L	I	A	E	A	D	E	S	D	A	.	.	.	.	.	S	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L	L	P	R
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	Y	A	V	I	E	L	G	A	N	H	Q	G	E	I	A	W	T	V	S	L	T	R	P	E	A	A	L	V	N	N	L	.	.	.	.	.	.	.	.	.	A	S	L	A	G	V	A	K	A	K	G	E	I	F	S	G	L	P	E	N	G	I	A	I	X	N	A	D	N	N	D	W	L	N	W	Q	S	V
Template Known Secondary structure			S									S	S	S	S												S								.	.	.	.	.	.	.	.	.												G	G	G	G	G			T	T							T	T	B
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		243	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		V	G	R	Q	T	T	T	Y	.	.	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S
Query Conservation										.	.
Alig confidence										.	.																																.
Template Conservation																																											.
Template Sequence		I	G	S	R	K	V	W	R	F	S	P	N	A	A	N	S	D	F	T	A	T	N	I	H	V	T	S	H	G	T	E	F	T	L	Q	T	P	T	G	S	V	.	D	V	L	L	P	L	P	G	R	H	N	I	A	N	A	L	A	A	A	A	L	S	X	S	V	G	A	T	L	D	A	I	K	A	G	L	A	N
Template Known Secondary structure			T	T	S							S	S		T	T		S	B									S	S	S								T	T				.						S	S	S	T																T	T											T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	G	T	G	R	R	F	D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	M	L	F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.
Template Sequence		L	K	A	V	P	G	R	L	F	P	I	Q	L	.	.	.	.	.	.	.	.	A	E	N	Q	L	L	L	D	D	S	Y	N	A	N	V	G	S	X	T	A	A	V	Q	V	L	A	E	X	P	G	Y	R	V	L	V	V	G	D	X	A	E	L	G	A	E	S	E	A	C	H	V	Q	V	G	E	A	A	K	A
Template Known Secondary structure						T	T	S	S						.	.	.	.	.	.	.	.		T	T								S																	S	S	S													T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
				401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	V	D	T	L	L	M	L	E	V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	I	R	G	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	N	I	G	K	I	A	R	S	L	A	E	I
Query Conservation		.	.
Alig confidence		.	.								.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Sequence		A	G	I	D	R	V	L	S	V	.	.	.	.	.	.	.	.	.	.	.	G	K	Q	S	H	A	I	S	T	A	S	.	.	.	.	.	G	V	G	E	H	F	A	D	K	T	A	L	I	T	R	L	K	L	L	I	A	E	Q	Q	V	I	T	I	L	V	K	G	S	R	S	A	A	X	E	E	V	V	R	A
Template Known Secondary structure			T		S						.	.	.	.	.	.	.	.	.	.	.	S	S	S	T							T	.	.	.	.	.	T	S					S	S																S	S									G	G	G	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390												.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		479	480
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		446	.