Job Description P17952 Confidence 100.00% Date Thu Jan 5 11:36:25 GMT 2012 Rank 8 Aligned Residues 377 % Identity 19% Template c1e8cB_ PDB info PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli Resolution 2.00 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																										.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		H	R	P	E	N	V	R	D	A	S	V	V	V	V	S	S	A	I	S	.	A	D	N	P	E	I	V	A	A	H	E	A	R	I	P	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	A	E	M	L	A	E	L	M	.	.	.	.	.	.	.	.
Query Conservation																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence																					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	S	R	V	A	A	A	G	D	L	F	V	A	V	V	G	H	Q	A	D	G	R	R	Y	I	P	Q	A	I	A	Q	G	V	A	A	I	I	A	E	A	K	D	E	A	T	D	G	E	I	R	E	X	H	G	V	P	V	I	Y	L	S	Q	L	N	E	R	L	S	A	L	A	G	R	F	Y	H	E	P	S
Template Known Secondary structure		S		G	G	G			T	T							B		S	S		B	G	G	G	G							T	T		S							T	T	T			T	T						T	T							T	T													T	T		G	G
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	R	H	G	I	A	I	A	G	T	H	G	K	T	T	T	T	A	M	V	S	S	I	Y	A	E	A	G	L	D	P	T	F	V	N	G	G	L	V	K	A	A	G	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	L	G	H	G	R	Y	L	I	A	E	A	D	E
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	L	R	L	V	G	V	T	G	T	N	G	K	T	T	T	T	Q	L	L	A	Q	W	S	Q	L	L	G	E	I	S	A	V	X	G	T	V	G	N	G	L	L	G	K	V	I	P	T	E	N	T	T	G	S	A	V	D	V	Q	H	E	L	A	G	L	V	D	Q	G	A	T	F	C	A	X	E	V	S	S
Template Known Secondary structure		G	S	S							S	S	S																T	T							S	T	T		B			T	T			B			S		S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
					178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.	.																																																																										.	.	.	.
Query SS confidence		.	.	.																																																																										.	.	.	.
Query Sequence		.	.	.	S	D	A	S	F	L	H	L	Q	P	M	V	A	I	V	T	N	I	E	A	D	H	M	D	T	Y	Q	G	D	F	E	N	L	K	Q	T	F	I	N	F	L	H	N	L	P	F	Y	G	R	A	V	M	C	V	D	D	P	V	I	R	E	L	L	P	R	V	G	R	Q	T	T	T	Y	.	.	.	.
Query Conservation		.	.	.																																																																										.	.	.	.
Alig confidence		.	.	.																											.																.	.																														.	.	.	.
Template Conservation																															.																.	.
Template Sequence		H	G	L	V	Q	H	R	V	A	A	L	K	F	A	A	S	V	F	T	N	L	S	R	D	H	L	D	Y	H	.	G	D	X	E	H	Y	E	A	A	W	L	L	Y	S	E	.	.	H	H	C	G	Q	A	I	I	N	A	D	D	E	V	G	R	R	W	L	A	K	L	P	D	A	V	A	V	S	X	E	D	H
Template Known Secondary structure						T	T	T	T	T	T		B		S									S							.		S													S	.	.	S	B								T	T	S								T	T		T	T						S	S	S
Template Predicted Secondary structure																															.																.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
				251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	F	S	E	D	A	D	V	R	V	E	D	Y	Q	Q	I	G	P	Q	G	H	F	T	L	L	R	Q	D	K	E	P	M	R	V	T	L	N	A	P	G	R	H	N	A	L	N	A	A	A	A	V	A	V	A	T	E	E	G	I	D	D	E	A	I	L	R	A	L	E	S	F	Q	G	T	G	R	R	F
Query Conservation		.	.
Alig confidence		.	.																																.
Template Conservation																																			.
Template Sequence		I	N	P	N	C	H	G	R	W	L	K	A	T	E	V	N	Y	H	D	S	G	A	T	I	R	F	S	S	S	W	G	D	G	.	E	I	E	S	H	L	X	G	A	F	N	V	S	N	L	L	L	A	L	A	T	L	L	A	L	G	Y	P	L	A	D	L	L	K	T	A	A	R	L	Q	P	V	C	G	R	X
Template Known Secondary structure				T	T	T		S												S	S									T	T				.						S		S																	T	T										G	G	G					T	T	S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	L	G	E	F	P	L	E	P	V	N	G	K	S	G	T	A	M	L	V	D	D	Y	G	H	H	P	T	E	V	D	A	T	I	K	A	A	R	A	G	W	P	D	K	N	L	V	M	L	F	Q	P	H	R	F	T	R	T	R	D	L	Y	D	D	F	A	N	V	L	T	Q	V	D	T	L	L	M	L	E
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.																														.
Template Conservation						.	.	.	.	.	.	.	.	.																														.
Template Sequence		E	V	F	T	.	.	.	.	.	.	.	.	.	A	P	G	K	P	T	V	V	V	D	Y	A	H	T	P	D	A	L	E	K	A	L	Q	A	A	R	L	H	C	.	A	G	K	L	W	C	V	F	G	C	G	G	D	R	D	K	G	K	R	P	L	X	G	A	I	A	E	E	F	A	D	V	A	V	V	T	D
Template Known Secondary structure						.	.	.	.	.	.	.	.	.		T	T	S										S														T		.	S	S										S	S	S		S	T														S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		343	.	.	.										.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.			.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		V	Y	P	A	G	E	A	P	I	P	G	A	D	S	R	S	L	C	R	T	I	R	G	.	.	R	G	K	I	D	P	I	L	V	P	D	P	A	R	V	A	E	M	L	A	P	V	L	T	G	N	D	L	I	L	V	Q	G	A	G	N
Query Conservation																									.	.
Alig confidence						.	.	.	.	.	.														.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		D	N	P	R	.	.	.	.	.	.	T	E	E	P	R	A	I	I	N	D	I	L	A	G	X	L	D	A	G	H	A	K	V	X	E	G	R	A	E	A	V	T	C	A	V	X	Q	A	K	E	N	D	V	V	L	V	A	G	K	G	H
Template Known Secondary structure		S			B	.	.	.	.	.	.	T	S											T	T	S	S		T	T	S	S				S													S		T	T							S		T	T
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		413	.	.	.							.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.