Job Description P24171 Confidence 90.37% Date Thu Jan 5 11:40:46 GMT 2012 Rank 53 Aligned Residues 286 % Identity 13% Template c3o0yC_ PDB info PDB header:lipid binding protein Chain: C: PDB Molecule:lipoprotein; PDBTitle: the crystal structure of the putative lipoprotein from colwellia2 psychrerythraea Resolution 1.70 Å

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		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	E	A	A	L	N	F	M	R	E	I	V	P	A	A	R	Q	R	A	S	D	E	L	A	S	I	Q	A	V	I	D	K	Q	Q	G	G	F	S	A	Q	P	W	D	W	A	F	Y	A	E	Q	V	R	R	E	K	F	D	L	D	E	A	Q	L	K	P	Y	F	E	L	N	T	V	L	N	E	G	V	F	W
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.
Template Sequence		S	P	T	Q	I	H	Q	I	G	L	D	E	V	A	R	I	S	G	V	M	N	E	.	.	.	.	.	.	.	.	I	L	L	A	Q	G	Y	T	K	G	T	V	G	E	R	M	V	A	L	N	E	E	P	R	F	L	Y	E	D	S	I	A	G	R	E	E	L	L	S	D	I	N	G	Y	I	T	E	V	T	A
Template Known Secondary structure																								.	.	.	.	.	.	.	.					T	T			S	S											T	S	G	G	G				S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.									.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	N	Q	L	F	G	I	K	F	V	E	R	F	D	I	P	V	Y	H	P	D	V	R	V	W	E	I	F	D	H	N	G	V	G	L	A	L	F	Y	G	D	F	F	A	R	D	S	K	S	G	G	A	W	M	G	N	F	V	E	Q	S	T	L	N	K	T	H	P	V	I	Y	N	V	C	N	Y	Q	K	P
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Sequence		K	M	A	P	V	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	P	S	Y	Q	V	E	V	K	S	F	P	V	E	V	Q	D	G	A	P	G	G	Q	Y	T	S	P	A	V	D	G	S	K	P	G	.	.	.	.	.	.	I	Y	W	I	N	L	R	D	M
Template Known Secondary structure			T	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S										T	T	T	T	T	T	S		S								T	T	S	S				.	.	.	.	.	.							S		G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template SS confidence
		373	.	.	.	.	.	.																							380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.							.	.	.	.	420	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.			.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																.	.
Query SS confidence																						.	.																.	.
Query Sequence		A	A	G	E	P	A	L	L	L	W	D	D	V	I	T	L	F	H	E	F	.	.	G	H	T	L	H	G	L	F	A	R	Q	R	Y	A	T	.	.	L	S	G	T	N	T	P	R	D	F	V	E	F	P	S	Q	I	N	E	H	W	A	T	H	P	Q	V	F	A	R	Y	A	R	H	Y	Q	S	G	A	A	M
Query Conservation																						.	.																.	.
Alig confidence						.	.	.	.													.	.																.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	N	P	.	.	.	.	K	F	G	L	K	T	L	T	Y	H	E	A	N	P	G	H	H	W	Q	I	A	L	N	L	D	Q	A	E	L	P	F	L	R	R	I	A	P	Y	N	A	Y	T	E	G	W	A	L	Y	S	E	Q	V	A	Y	E	L	G	M	.	.	.	.	.	.	.	.	.	.	Y	E	N	D
Template Known Secondary structure		G	G	S		.	.	.	.												S	T	T	T										T		T	T	S						T																					T	T	T	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure						.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		425	.	.	.					.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.											.	.	.	490
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	E	L	Q	Q	K	M	R	N	A	S	L	F	N	K	G	Y	E	M	S	E	L	L	S	A	A	L	L	D	M	R	W	H	C	L	E	E	N	E	A	M	Q	D	V	D	D	F	E	L	R	A	L	V	A	E	N	M	D	L	P	A	I	P	P	R	Y	R	S	S	Y	F	A	H	I	F	G	G	G	Y
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																															.	.	.	.			.
Template Conservation												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																															.	.	.	.			.
Template Sequence		P	F	G	D	L	G	R	L	Q	A	.	.	.	.	.	.	.	.	.	E	L	F	R	A	V	R	L	V	V	D	T	G	L	H	.	.	.	.	.	.	.	D	K	R	W	T	R	E	Q	A	I	S	Y	M	S	E	Q	T	G	T	A	E	S	D	V	V	A	E	I	E	R	.	.	.	.	Y	M	.	A	W
Template Known Secondary structure												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	T	T															S														.	.	.	.			.		S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																															.	.	.	.			.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500										.	.	.	.	.	.	.	.	.	510	.	.	.	.	.								.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.					.	.		.	.
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.			.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		A	A	G	Y	Y	A	Y	L	W	T	Q	M	L	A	D	D	G	Y	Q	W	F	V	E	Q	.	.	G	G	L	T	R	E	N	G	L	R	F	R	E	A	I	L	S	R	G	N
Query Conservation																										.	.
Alig confidence																										.	.						.	.	.
Template Conservation																																	.	.	.
Template Sequence		P	G	Q	A	L	G	Y	K	L	G	M	L	K	I	L	S	L	R	E	Q	A	K	A	R	L	G	D	K	F	D	L	.	.	.	A	E	F	H	D	V	V	L	L	N	G	A
Template Known Secondary structure		T	T	G	G	G																					G	G	G				.	.	.									T	T		S
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580				.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions