Job Description P24171 Confidence 32.99% Date Thu Jan 5 11:40:46 GMT 2012 Rank 125 Aligned Residues 293 % Identity 14% Template c3iukB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases Resolution 1.85 Å

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		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	I	V	P	A	A	R	Q	R	A	S	D	E	L	A	S	I	Q	A	V	I	D	K	Q	Q	G	G	F	S	A	Q	P	W	D	W	A	F	Y	A	E	Q	V	R	R	E	K	F	D	L	D	E	A	Q	L	K	P	Y	F	E	L	N	T	V	L	N	E	G	V	F	W	T	A	N	Q	L	F	G	I	K
Query Conservation
Alig confidence																																.	.																											.	.	.	.	.	.	.	.
Template Conservation																																.	.																											.	.	.	.	.	.	.	.
Template Sequence		E	E	T	Y	A	W	G	V	Q	E	L	E	R	L	I	S	E	Q	E	K	V	A	G	Q	I	K	P	G	A	S	.	.	I	E	E	A	K	S	I	L	N	N	D	P	A	R	Q	I	K	G	T	D	A	L	K	A	W	X	.	.	.	.	.	.	.	.	Q	E	L	S	D	R	A	V	S	E	L	A	D	V
Template Known Secondary structure																											S	T	T			.	.												G	G	G				S									.	.	.	.	.	.	.	.												B	T	T
Template Predicted Secondary structure																																.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.									.	.	.	.	.	.	.	.	320	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	E	R	F	D	I	P	V	Y	H	P	D	V	R	V	W	E	I	F	D	H	N	G	V	G	L	A	L	F	Y	G	D	F	F	A	R	D	S	K	S	G	G	A	W	M	G	N	F	V	E	Q	S	T	L	N	K	T	H	P	V	I	Y	N	V	C	N	Y	Q	K	P	A	A	G	E	P	A	L	L	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.														.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.														.	.	.
Template Sequence		H	F	D	I	P	D	V	X	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	C	X	I	A	P	T	D	G	I	Y	Y	T	G	P	S	D	D	F	S	R	P	G	R	.	.	.	.	.	.	.	X	W	W	S	V	P	A	G	E	D	T	F	T	.	.	.	T
Template Known Secondary structure		T	B				G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S											T	T	S	S	S				.	.	.	.	.	.	.							T	T						.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.														.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.																						.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360								.	.	.	.	.	.	.	.	.	370	.	.	.				.
		462	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.					.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure													.	.																	.	.	.	.
Query SS confidence													.	.																	.	.	.	.
Query Sequence		W	D	D	V	I	T	L	F	H	E	F	.	.	G	H	T	L	H	G	L	F	A	R	Q	R	Y	A	T	L	.	.	.	.	S	G	T	N	T	P	R	D	F	V	E	F	P	S	Q	I	N	E	H	W	A	T	H	P	Q	V	F	A	R	Y	A	R	H	Y	Q	S	G	A	A	M	P	D	E	L	Q	Q	K
Query Conservation													.	.																	.	.	.	.
Alig confidence													.	.																	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	S	E	T	T	T	V	F	H	E	G	V	P	G	H	H	L	Q	V	A	T	A	T	Y	R	R	E	L	L	N	N	W	R	R	N	V	C	W	V	S	G	H	G	E	G	W	A	L	Y	A	E	Q	L	X	L	E	L	G	Y	.	.	.	.	.	.	.	.	.	.	.	L	K	D	P	G	D	H	X	G	X
Template Known Secondary structure		T	T	T								S	T	T	T											T	G	G	G	S							T																					T	T	T	.	.	.	.	.	.	.	.	.	.	.	T		S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.												.	.	.	.	440	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.				570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		M	R	N	A	S	L	F	N	K	G	Y	E	M	S	E	L	L	S	A	A	L	L	D	M	R	W	H	C	L	E	E	N	E	A	.	.	.	M	Q	D	V	D	D	F	E	L	R	A	L	V	A	E	N	M	D	L	P	A	I	P	P	R	Y	R	S	S	Y	F	A	H	I	F	G	G	G	Y	A	A	G	Y
Query Conservation																																				.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.																							.	.	.																																.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template Sequence		L	D	G	.	.	.	.	.	.	.	.	.	Q	R	X	R	A	A	R	V	V	F	D	I	G	V	H	L	E	L	P	V	P	E	R	W	G	T	G	T	W	T	P	E	K	G	F	D	F	L	K	A	N	L	D	I	S	E	G	Q	L	Q	F	E	F	T	R	Y	.	.	.	.	.	L	G	W	P	G	Q	A
Template Known Secondary structure					.	.	.	.	.	.	.	.	.																T	T		B			T	T	T		S	S	B																S													.	.	.	.	.			S	T	T	S	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.
Template SS confidence
		446	.	.										.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.						.	.	.	.	.	510	.
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	Y	L	W	T	Q	M	L	A	D	D	G	Y	Q	W	F	V	E	Q	G	G	L	T	R	E	N	G	L	R	F	R	E	A	I	L	S	R	G	N	S	E	D	L	E	R	L	Y	R	Q	W	R
Query Conservation
Alig confidence																										.	.	.													.
Template Conservation																										.	.	.													.
Template Sequence		P	S	Y	K	V	G	Q	R	L	W	E	Q	I	R	A	E	L	E	S	R	E	G	F	D	.	.	.	L	K	S	F	H	S	K	A	L	N	I	G	.	S	V	G	L	D	V	L	R	R	A	L	L
Template Known Secondary structure		T																		T	S	T	T			.	.	.											T		.	S
Template Predicted Secondary structure																										.	.	.													.
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.	.	.	.		.	.	550	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions