 |
Job Description | P32670 | Confidence | 23.20% | Date | Thu Jan 5 11:49:59 GMT 2012 |
Rank | 204 | Aligned Residues | 93 |
% Identity | 12% | Template | c3stgA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; |
PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis
|
Resolution | 2.20 Å |
|
 |
  |   |
511 | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | |
|
|
. | . | . | . | . | . | 580 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  | . | . | . |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | W | V | K | E | K | L | A | E | A | K | Q | Q | L | R | N | E | H | I | P | F | D | E | K | I | Q | L | G | I | M | L | E | V | P | S | V | M | F | I | I | D | Q | C | C | E | E | I | D | F | F | S | I | G | S | N | D | L | T | Q | Y | L | L | . |
. |
. |
A | V | D | R | D | N | A | K | V | T | R | H | Y | N |
Query Conservation |   |
  |   |   |   |
|   |   |
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
| . | . | . |
|   |
|
|   |
|   |   |
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |   |
|   |   |   |   |   |   |   | . | . | . |
|
|   |   | . | . | . | . | . | . | . | . | . |   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |   |
|   |   |   |
|
|
|
|   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|   |
Template Sequence |   |
L | E | E | G | L | K | I | F | E | K | V | K | A | E | F | . |
. |
. |
G | I | P | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
I | T | D | V | H | E | P | H | Q | C | Q | P | V | A | E | V | C | D | V | I | Q | L | P | A | F | L | A | R | Q | T | D | L | V | V | A | M | A | K | T | G | N | V | V | N | I | K | K | P | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  | . | . | . | . | . | . | . | . | . |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |
| S |  |  |  |  |
| G | G | G | T | T |
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
| T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | |
|
|
. | . | . | . | |
|
|
|
|
|
|
|
|
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
  |   |
588 | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | L | N | P | A | F | L | R | A | L | D | Y | A | V | Q | A | V | H | R | Q | G | K | W | I | G | L | C | G |
Query Conservation |   |
  |   |
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|
|   |   |
|   |
|   |   |
|
|
Template Sequence |   |
F | L | S | P | S | Q | M | K | N | I | V | E | K | F | H | E | A | G | N | G | K | L | I | L | C | E | R | G |
Template Known Secondary structure |   |
T | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|