Job Description P32670 Confidence 31.47% Date Thu Jan 5 11:49:59 GMT 2012 Rank 180 Aligned Residues 195 % Identity 18% Template c2xdqA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex Resolution 2.40 Å

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		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.						.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		P	A	I	C	M	A	D	E	L	T	P	S	Q	F	L	E	L	D	K	N	H	L	K	G	L	L	L	K	S	G	G	T	T	S	H	T	V	I	L	A	R	S	F	N	I	P	T	L	.	.	.	.	.	V	G	V	D	I	D	A	L	T	P	W	Q	Q	Q	T	I	Y	I	D	G	N	A	G	A	I	V	V
Query Conservation																																																		.	.	.	.	.
Alig confidence																																			.	.														.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.																															.	.	.	.	.	.	.	.	.
Template Sequence		K	V	S	G	W	L	P	A	K	R	Y	T	E	L	P	V	I	D	E	G	Y	Y	V	A	G	V	N	P	F	L	S	R	T	.	.	A	T	T	L	I	R	R	R	K	C	Q	L	I	T	A	P	F	P	I	G	P	D	G	T	R	T	W	I	E	Q	.	.	.	.	.	.	.	.	.	I	C	A	T	F	G
Template Known Secondary structure								S		S	S	G	G	G						T	T						S	S	T	T					.	.							T	T										S	B												.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																			.	.																															.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.										.	.	.	.	290	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																																			.													.	.	.	.
Query SS confidence																																																			.													.	.	.	.
Query Sequence		E	P	G	E	A	V	A	R	Y	Y	Q	Q	E	A	R	V	Q	D	A	L	R	E	Q	Q	R	V	W	L	T	Q	Q	A	R	T	A	D	G	I	R	I	E	I	A	A	N	I	A	H	S	.	V	E	A	Q	A	A	F	G	N	G	A	E	.	.	.	.	G	V	G	L	F	R	T	E	M	L	Y	M	D	R
Query Conservation																																																			.													.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.														.													.	.	.	.											.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Sequence		I	Q	P	Q	G	L	A	E	R	E	A	E	T	W	Q	K	L	S	D	Y	L	E	L	V	R	.	.	.	.	.	.	.	.	.	.	.	G	K	S	V	F	F	M	G	D	N	L	L	E	I	S	L	A	R	F	L	I	R	C	G	M	R	V	L	E	I	G	I	P	Y	M	D	K	R	Y	Q	.	.	.	.
Template Known Secondary structure						S											T	T								T	.	.	.	.	.	.	.	.	.	.	.	T									S	S												T	T									S								.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.												.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.																	.	.	450	.	.				.	.	.	.	.	.	.	460	.	.	.	.							.	.	.	.	.	470	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.													.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.													.	.	.	.	.	.
Query Sequence		T	S	A	P	G	E	S	E	L	Y	N	I	F	C	Q	A	L	E	S	A	N	G	R	S	I	I	V	R	T	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	G	D	K	.	.	.	P	V	D	Y	L	N	I	P	A	E	A	N	.	.	.	.	.	.	P	F	L	G	Y	R	A
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.													.	.	.	.	.	.
Alig confidence		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.													.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	A	A	E	L	A	L	L	S	Q	T	C	A	E	M	G	H	P	L	P	T	I	V	E	K	P	D	N	Y	N	Q	L	Q	R	I	K	A	L	Q	P	D	L	V	I	T	G	M	A	H	A	N	P	L	E	A	R	G	I	S	T	K	W	S	V	E	F	T	F	A	Q	I	H	G	F	G	N
Template Known Secondary structure		.	.	.	.	.														T	T									S																S														T	B	T						T	T					S			B	S	G	G	G
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	I	Y	E	E	Y	A	S	L	F	T	T	Q	L	R	S	I	L	R	A	S	A	H	G	S	L
Query Conservation
Alig confidence				.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.
Template Sequence		A	R	.	.	.	.	.	.	D	I	L	E	L	V	T	R	P	L	R	R	N	Q	A	L	A	G	L
Template Known Secondary structure				.	.	.	.	.	.																T		S	S
Template Predicted Secondary structure				.	.	.	.	.	.
Template SS confidence
		432	.							.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions