Job Description P68739 Confidence 100.00% Date Thu Jan 5 12:11:10 GMT 2012 Rank 3 Aligned Residues 211 % Identity 38% Template c2w36B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	L	A	S	L	R	A	Q	Q	I	E	L	A	S	S	V	I	R	E	D	R	L	D	K	D	P	P	D	L	I	A	G	A	D	V	G	F	E	Q	G	G	E	V	T	R	A	A	M	V	L	L	K	Y	P	S	L	E	L	V	E	Y	K	V	A	R	I	A	T	T	M	P	Y	I	P	G	F	L	S	F
Query Conservation
Alig confidence																								.	.																	.
Template Conservation																								.	.																	.
Template Sequence		L	P	P	E	E	A	I	K	V	Q	N	E	L	R	K	K	I	K	L	T	P	Y	.	.	E	G	E	P	E	Y	V	A	G	V	A	L	S	F	P	G	.	K	E	E	G	L	A	V	I	V	V	L	E	Y	P	S	F	K	I	L	E	V	V	S	E	R	G	E	I	T	F	P	Y	I	P	G	L	L	A	F
Template Known Secondary structure															G	G	G							.	.		S			S												.	T	T											T	T	T	T														S				T	T		T
Template Predicted Secondary structure																								.	.																	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	Y	P	A	L	L	A	A	W	E	M	L	S	Q	K	P	D	L	V	F	V	D	G	H	G	I	S	H	P	R	R	L	G	V	A	S	H	F	G	L	L	V	D	V	P	T	I	G	V	A	K	K	R	L	C	G	K	F	E	P	L	S	S	E	P	G	A	L	A	P	L	M	D	K	G	E	Q	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	G	P	L	F	L	K	A	W	E	K	L	R	T	K	P	D	V	V	V	F	D	G	Q	G	L	A	H	P	R	K	L	G	I	A	S	H	M	G	L	F	I	E	I	P	T	I	G	V	A	K	S	R	L	Y	G	T	F	K	M	P	E	D	K	R	C	S	W	S	Y	L	Y	D	G	E	E	I	I	G
Template Known Secondary structure																S			S						S		S	S	S	S	T	T	S												T	S							S	S		S	S		B						S	S	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		W	V	W	R	S	K	A	R	C	N	P	L	F	I	A	T	G	H	R	V	S	V	D	S	A	L	A	W	V	Q	R	C	M	.	K	G	Y	R	L	P	E	P	T	R	W	A	D	A	V	A	S	E	R	P	A
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		C	V	I	R	T	K	E	G	S	A	P	I	F	V	S	P	G	H	L	M	D	V	E	S	S	K	R	L	I	K	A	F	T	L	P	G	R	R	I	P	E	P	T	R	L	A	H	I	Y	T	Q	R	L	K	K
Template Known Secondary structure							S	T	T	S									S	S																T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions