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Job DescriptionP68739
Confidence93.21%DateThu Jan 5 12:11:10 GMT 2012
Rank9Aligned Residues183
% Identity16%Templatec2f8sA_
PDB info PDB header:rna binding protein/rnaChain: A: PDB Molecule:argonaute protein; PDBTitle: crystal structure of aa-ago with externally-bound sirna
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40..... ....50.........60.........70.........80.........90...... ...100
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Query Sequence  DKDPPDLIAGADVGFEQGGEVT. . RAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK. PDLV
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Template Sequence  IEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKA. . . . IGDVFSLLEKLGFKKGSKI
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   491........500.........510.........520.........530.........540....... ..550.........560......
 
   101........110.........120.... .....130.........140.........150.........160........ .170..... .
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Query Sequence  FVDGHGISHPRRLGVASHFGLLVD. . VPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLAWVWRSKAR. CNPLFIA. T
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Template Sequence  VVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVYEGTHQPIKVRKV
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   567..570.........580.........590.........600.........610.........620.........630.........640......
 
   177..180.........190...... ...200.........210
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Query Sequence  GHRVSVDSALAWVQRCMKGY. . . . . . . RLPEPTRWADAVAS
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Template Sequence  YGELPVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITK
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   647..650.........660.........670.........680.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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