Job Description P68739 Confidence 93.21% Date Thu Jan 5 12:11:10 GMT 2012 Rank 9 Aligned Residues 183 % Identity 16% Template c2f8sA_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:argonaute protein; PDBTitle: crystal structure of aa-ago with externally-bound sirna Resolution 3.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100
Predicted Secondary structure																								.	.																																																				.
Query SS confidence																								.	.																																																				.
Query Sequence		D	K	D	P	P	D	L	I	A	G	A	D	V	G	F	E	Q	G	G	E	V	T	.	.	R	A	A	M	V	L	L	K	Y	P	S	L	E	L	V	E	Y	K	V	A	R	I	A	T	T	M	P	Y	I	P	G	F	L	S	F	R	E	Y	P	A	L	L	A	A	W	E	M	L	S	Q	K	.	P	D	L	V
Query Conservation																								.	.																																																				.
Alig confidence																								.	.																																		.	.	.	.															.
Template Conservation																																																											.	.	.	.
Template Sequence		I	E	G	K	V	D	A	F	V	G	I	D	I	S	R	I	T	R	D	G	K	T	V	N	A	V	A	F	T	K	I	F	N	S	K	G	E	L	V	R	Y	Y	L	T	S	Y	P	A	F	G	E	K	L	T	E	K	A	.	.	.	.	I	G	D	V	F	S	L	L	E	K	L	G	F	K	K	G	S	K	I
Template Known Secondary structure			S	S			S													T	T				S										T	T															S	T	T						.	.	.	.											T	T			T	T
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.					.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.		.
Predicted Secondary structure																										.	.																																													.								.
Query SS confidence																										.	.																																													.								.
Query Sequence		F	V	D	G	H	G	I	S	H	P	R	R	L	G	V	A	S	H	F	G	L	L	V	D	.	.	V	P	T	I	G	V	A	K	K	R	L	C	G	K	F	E	P	L	S	S	E	P	G	A	L	A	P	L	M	D	K	G	E	Q	L	A	W	V	W	R	S	K	A	R	.	C	N	P	L	F	I	A	.	T
Query Conservation																										.	.																																													.								.
Alig confidence																										.	.																																													.								.
Template Conservation
Template Sequence		V	V	H	R	D	G	R	L	Y	R	D	E	V	A	A	F	K	K	Y	G	E	L	Y	G	Y	S	L	E	L	L	E	I	I	K	R	N	N	P	R	F	F	S	N	E	K	F	I	K	G	Y	F	Y	K	L	S	E	D	S	V	I	L	A	T	Y	N	Q	V	Y	E	G	T	H	Q	P	I	K	V	R	K	V
Template Known Secondary structure						S	S																		T											S	S							S		S			T	T						T	T	T							S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																						.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.
Query Sequence		G	H	R	V	S	V	D	S	A	L	A	W	V	Q	R	C	M	K	G	Y	.	.	.	.	.	.	.	R	L	P	E	P	T	R	W	A	D	A	V	A	S
Query Conservation																						.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	E	L	P	V	E	V	L	C	S	Q	I	L	S	L	T	L	M	N	Y	S	S	F	Q	P	I	K	L	P	A	T	V	H	Y	S	D	K	I	T	K
Template Known Secondary structure				S	S													G	G	G	G			T	T	S			S	S		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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