Job Description P0AD30 Confidence 4.76% Date Thu Jan 5 11:19:49 GMT 2012 Rank 25 Aligned Residues 141 % Identity 19% Template c2b5fD_ PDB info PDB header:transport protein,membrane protein Chain: D: PDB Molecule:aquaporin; PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution Resolution 3.90 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	S	A	T	I	Y	F	I	R	R	K	V	V	S	L	S	D	Q	K	L	N	I	A	M	T	F	V	G	S	M	S	G	A	L	L	V	Q	Y	V	Q	A	D	V	L	R	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	I	L	V	I	C	I	G	L	Y	F	L	L	M	P
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	A	V	T	F	G	L	F	L	A	R	K	V	S	L	L	R	A	L	V	Y	M	I	A	Q	C	L	G	A	I	C	G	V	G	L	V	K	A	F	M	K	G	P	Y	N	Q	F	G	G	G	A	N	S	V	A	L	G	Y	N	K	G	T	A	L	G	A	E	I	I	G	T	F	V	L	V	Y	T	V	F
Template Known Secondary structure		S									T	T	T	S	S																											S							S	G	G	G						T	T	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	G	E	E	D	R	Q	R	R	M	Y	G	L	P	F	A	L	I	A	G	G	C	V	G	F	Y	D	G	F	F	G	P	A	A	G	S	F	Y	A	L	A	F	V	T	L	C	G	F	N	L	A	K	A	T	A	H	A	K	L	L	N	A	T	S	N	I	G	G	L	L	L	F	I	L	G	G	K	V	I
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	T	D	P	K	H	V	P	I	L	A	P	L	P	I	G	F	A	V	F	M	V	H	L	A	T	I	P	I	T	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	N	P	A	R	S	F	G	A	A	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	S	N	K	V
Template Known Secondary structure			T											S															T	T	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.															.	.	.	.	.	.	220	.	.	.	.	.	.															.	.	.	230	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	T	G	F	V	M	L	V	G	Q	F	L	G	A	R	M	G	S	R	L	V	L	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	D	D	Q	W	I	F	W	V	G	P	F	I	G	A	A	V	A	A	A	Y	H	Q	Y	V
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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