Job Description P04816 Confidence 98.75% Date Wed Jan 25 15:20:10 GMT 2012 Rank 41 Aligned Residues 237 % Identity 11% Template d1tjya_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.30

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	.	I	G	H	L	C
Query Conservation																																																																												.
Alig confidence																	.	.																		.	.	.	.	.	.	.									.																									.
Template Conservation																	.	.																		.	.	.	.	.	.	.									.
Template Sequence		G	S	A	E	R	I	A	F	I	P	K	L	V	G	V	.	.	G	F	F	T	S	G	G	N	G	A	Q	E	A	G	K	A	L	.	.	.	.	.	.	.	G	I	D	V	T	Y	D	G	.	P	T	E	P	S	V	S	G	Q	V	Q	L	V	N	N	F	V	N	Q	G	Y	D	A	I	I	V	S	A	V	S
Template Known Secondary structure												S	S	S	S	S	.	.																		.	.	.	.	.	.	.	T								.		S	S																T	T		S							S	S
Template Predicted Secondary structure																	.	.																		.	.	.	.	.	.	.									.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.								.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.			.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.						.	.
Query SS confidence																																																															.	.						.	.
Query Sequence		S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	.	.	R	I	A	I	I	.	.	H	D	K	Q	Q	Y	G	E	G	L
Query Conservation																																																															.	.						.	.
Alig confidence																															.	.	.	.																													.	.						.	.
Template Conservation																															.	.	.	.
Template Sequence		P	D	G	L	C	P	A	L	K	R	A	M	Q	R	G	V	K	I	L	T	W	D	S	D	T	K	P	E	C	.	.	.	.	R	S	Y	Y	I	N	Q	G	T	P	K	Q	L	G	S	M	L	V	E	M	A	A	H	Q	V	D	K	E	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W
Template Known Secondary structure		S	S	T	T										T	T							S	S				G	G	G	.	.	.	.		S					S																				S	S	S								S		S	S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		178	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure													.	.																																.
Query SS confidence													.	.																																.
Query Sequence		A	R	S	V	Q	D	G	L	K	A	A	.	.	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A
Query Conservation													.	.																																.
Alig confidence													.	.																																.
Template Conservation
Template Sequence		V	K	E	A	K	A	K	I	S	Q	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	I	K	A	Y	P	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	R	N	N	L	A	I	V	G	F	S	T	P	N	V
Template Known Secondary structure														T	T										T	T																	S	S								S	T	T												T	T			S						B
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	R	P	Y	V	Q	R	G	T	V	K	E	F	G	L	W	D	V	V
Template Known Secondary structure									T	S		S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions