Job Description P04816 Confidence 98.85% Date Wed Jan 25 15:20:10 GMT 2012 Rank 39 Aligned Residues 228 % Identity 12% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	.	H	L	C
Query Conservation																																																																														.
Alig confidence																					.																		.	.	.	.	.																																			.
Template Conservation																					.																		.	.	.	.	.
Template Sequence		Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	V	S	D	Y	W	.	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N	I	N	.	.	.	.	.	Y	Q	L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T
Template Known Secondary structure		S	S												S	S					.														T	T			.	.	.	.	.										T	T																T	T		S							S	S
Template Predicted Secondary structure																					.																		.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	.	.	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R
Query Conservation																																																											.	.
Alig confidence																																																											.	.
Template Conservation
Template Sequence		T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F	D	H	A	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D
Template Known Secondary structure		S	T	T												S							T			S		B	G	G	G	T	T	S			S																						S		T	T									S	T	T
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure											.																																.
Query SS confidence											.																																.
Query Sequence		S	V	Q	D	G	L	K	A	A	.	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L
Query Conservation											.																																.
Alig confidence											.																																.
Template Conservation
Template Sequence		T	F	I	H	Q	V	N	R	D	N	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V	D	F	I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L
Template Known Secondary structure																							S	S																			S					S	S															T		T	T	S			B		S	B
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions