Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 21 Aligned Residues 350 % Identity 18% Template d1ewka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.20

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.															.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		S	H	T	A	M	A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	.	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		S	V	A	R	M	D	G	D	V	I	I	G	A	L	F	S	V	H	H	Q	P	P	A	E	K	V	P	E	R	K	C	G	E	I	R	E	Q	Y	G	I	Q	R	V	E	A	M	F	H	T	L	D	K	I	N	A	D	P	V	L	L	P	N	I	T	L	G	S	E	I	R	D	S	C	W	H	S	S	V	A	L
Template Known Secondary structure									S									S	B					T	T	T	G	G	G	T					B		T	T	T	T																		S	S	S	S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	.	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P
Query Conservation																																																					.
Alig confidence																																																					.																							.
Template Conservation																																																																												.
Template Sequence		E	Q	S	I	E	F	I	R	K	P	I	A	G	V	I	G	P	G	S	S	S	V	A	I	Q	V	Q	N	L	L	Q	L	F	D	I	P	Q	I	A	Y	S	A	T	S	I	D	L	S	D	K	T	L	Y	K	Y	F	L	R	V	V	P	S	D	T	L	Q	A	R	A	M	L	D	I	V	.	K	R	Y	N	W
Template Known Secondary structure																			S	S												G	G	G	T						S	S				G	G	G	G		T	T	T		T	T				S	S															.			T	T
Template Predicted Secondary structure																																																																												.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.																		.	.
Query SS confidence																																									.	.																		.	.
Query Sequence		Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	.	.	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	.	.	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R
Query Conservation																																									.	.																		.	.
Alig confidence																																									.	.																		.	.
Template Conservation
Template Sequence		T	Y	V	S	A	V	H	T	E	G	N	Y	G	E	S	G	M	D	A	F	K	E	L	A	A	Q	E	G	L	C	I	A	H	S	D	K	I	Y	S	N	A	G	E	K	S	F	D	R	L	L	R	K	L	R	E	R	L	P	K	A	R	V	V	V	C	F	C	E	G	M	T	V	R	G	L	L	S	A	M	R
Template Known Secondary structure										S	S																		T											T	T															T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		238	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Query SS confidence								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Query Sequence		S	V	G	L	K	T	.	.	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	D	A	L	K	A	D	K	K	.	.	.	.	.	.	.
Query Conservation								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Alig confidence								.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	G	V	V	G	E	F	S	L	I	G	S	D	G	W	A	D	R	D	E	V	I	E	G	Y	E	V	E	A	N	G	G	I	T	I	K	L	Q	S	P	E	V	R	S	F	D	D	Y	F	L	K	L	R	L	D	T	N	T	R	N	P	W	F	P	E	F	W	Q	H	R	F	Q	C	R	L	P	G	H	L
Template Known Secondary structure				T			S								T	T	T	T	T						T	T						T	T																			T	T			T	T	T			S		T	T									T	T		B		T	T		T
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
																					294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.																.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	N	P	N	F	K	K	V	C	T	G	N	E	S	L	E	E	N	Y	V	Q	D	S	K	M	G	F	V	I	N	A	I	Y	A	M	A	H	G	L	Q	N	M	H	H	A	L	C	P	G	H	V	G	L	C	D	A	M	K	P	I	D	G	R	K	L	L	D	F	L	I	K	S	S	F	V	G	V	S	G
Template Known Secondary structure		T			T	T			S	B			S				T	T	T	T					T	T																							S	T	T		S	S			G	G	G	S	S												T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.
Predicted Secondary structure		.																							.	.
Query SS confidence		.																							.	.
Query Sequence		.	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	.	.	D	G	S	S	T	A	A	K
Query Conservation		.																							.	.
Alig confidence		.												.											.	.
Template Conservation														.
Template Sequence		E	E	V	W	F	D	E	K	G	D	A	P	.	G	R	Y	D	I	M	N	L	Q	Y	T	E	A	N	R	Y	D	Y	V	H
Template Known Secondary structure								T	T	S				.												S	S	S
Template Predicted Secondary structure														.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions