Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 25 Aligned Residues 341 % Identity 16% Template d1dp4a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.00

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.
Predicted Secondary structure																						.																				.													.	.	.	.	.															.
Query SS confidence																						.																				.													.	.	.	.	.															.
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	.	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	.	G	D	K	L	V	G	V	E	Y	D	D	A	.	.	.	.	.	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	.	N	D	G	I	K	Y	V
Query Conservation																						.																				.													.	.	.	.	.															.
Alig confidence																						.																				.													.	.	.	.	.															.
Template Conservation
Template Sequence		D	L	T	V	A	V	V	L	P	L	T	N	T	S	Y	P	W	S	W	A	R	V	G	P	A	V	E	L	A	L	A	R	V	K	A	R	P	D	L	L	P	G	W	T	V	R	M	V	L	G	S	S	E	N	A	A	G	V	C	S	D	T	A	A	P	L	A	A	V	D	L	K	W	E	H	S	P	A	V	F
Template Known Secondary structure											S	S				S	T	T																		T		T	T	S	S	T	T											B		T	T	S	S	B		T	T																S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	.	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E
Query Conservation																																						.
Alig confidence																																						.																								.
Template Conservation																																																														.
Template Sequence		L	G	P	G	C	V	Y	S	A	A	P	V	G	R	F	T	A	H	W	R	V	P	L	L	T	A	G	A	P	A	L	G	I	G	V	K	D	E	Y	A	L	T	T	R	T	G	P	S	H	V	K	L	G	D	F	V	T	A	L	H	.	R	R	L	G	W	E	H	Q	A	L	V	L	Y	A	D	R	L	G	D
Template Known Secondary structure						S															T						S					G	G	G	G		T	T	T	S	T	T					S															.				T			S										S	S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		176						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.	.
Predicted Secondary structure			.	.	.	.	.																																																																					.	.	.
Query SS confidence			.	.	.	.	.																																																																					.	.	.
Query Sequence		G	.	.	.	.	.	L	A	R	S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	.	.	.	F	M	G
Query Conservation			.	.	.	.	.																																																																					.	.	.
Alig confidence			.	.	.	.	.																																																																					.	.	.
Template Conservation
Template Sequence		D	R	P	C	F	F	I	V	E	G	L	Y	M	R	V	R	E	R	L	N	I	T	V	N	H	Q	E	F	V	E	G	D	P	D	H	Y	P	K	L	L	R	A	V	R	R	K	G	R	V	I	Y	I	C	S	S	P	D	A	F	R	N	L	M	L	L	A	L	N	A	G	L	T	G	E	D	Y	V	F	F	H
Template Known Secondary structure																															T	T		G	G	G													S						S															T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.										.	.	.	.	.	.	300	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		P	E	G	V	G	N	A	S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	.	.	.	.	.	.	.	.	.	D	P	S	G	P	Y	V	W	I
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	V	F	G	Q	S	L	K	S	A	Q	G	L	V	P	Q	K	P	W	E	R	G	D	G	Q	D	R	S	A	R	Q	A	F	Q	A	A	K	I	I	T	Y	K	E	P	D	N	P	E	Y	L	E	F	L	K	Q	L	K	L	L	A	D	K	K	F	N	F	T	V	E	D	G	L	K	N	I	I	P	A	S
Template Known Secondary structure				T	T		T	T	S		S	S		T	T	S		B		T	T			S	S	S									G	G	G											S																									S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.																																												.
Query SS confidence																	.	.	.	.	.																																												.
Query Sequence		T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	.	.	.	.	.	G	S	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	.	A	D	G	S	S	T	A
Query Conservation																	.	.	.	.	.																																												.
Alig confidence																	.	.	.	.	.																																		.										.
Template Conservation																																																							.
Template Sequence		F	H	D	G	L	L	L	Y	V	Q	A	V	T	E	T	L	A	Q	G	G	T	V	T	D	G	E	N	I	T	Q	R	M	W	N	R	S	F	Q	G	V	T	G	Y	L	K	I	D	R	N	G	D	R	D	.	T	D	F	S	L	W	D	M	D	P	E	T	G	A	F	R	V
Template Known Secondary structure																			T	T			T	T								T	T	T	T						T	T							T	T	S	B	B		.										T	T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions