Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 14 Aligned Residues 335 % Identity 24% Template c3td9A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	.	D	G	I	K	Y	V	I	G	H	L	C	S	S	S
Query Conservation																																																																			.
Alig confidence																																		.	.	.																															.
Template Conservation																																		.	.	.
Template Sequence		V	K	I	A	V	I	L	P	X	T	G	G	I	S	A	F	G	R	X	V	W	E	G	I	Q	I	A	H	E	E	K	P	.	.	.	T	V	L	G	E	E	V	E	L	V	L	L	D	T	R	S	E	K	T	E	A	A	N	A	A	A	R	A	I	D	K	E	K	V	L	A	I	I	G	E	V	A	S	A	H
Template Known Secondary structure											S	S	T	T																				.	.	.			T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D	G
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		S	L	A	I	A	P	I	A	E	E	N	K	V	P	X	V	T	P	A	S	T	N	P	L	V	T	Q	G	R	.	K	F	V	S	R	V	C	F	I	D	P	F	Q	G	A	A	X	A	V	F	A	Y	K	N	L	G	A	K	R	V	V	V	F	T	D	V	E	Q	D	Y	S	V	G	L	S	N	F	F	I	N
Template Known Secondary structure												T	T						S	S				G	G	G	T	T	T		.	S	S				S	S																	T	S											T	T
Template Predicted Secondary structure																															.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G	D	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	T	E	L	G	G	Q	V	K	R	V	F	F	R	S	G	D	Q	D	F	S	A	Q	L	S	V	A	X	S	F	N	P	D	A	I	Y	I	T	G	Y	Y	P	E	I	A	L	I	S	R	Q	A	R	Q	L	G	F	T	G	Y	I	L	A	G	D	G	A	D	A	P	E	L	I	E	I	G	G	E	A	V
Template Known Secondary structure						T	T										T	T														T			S						S															T	T			S						G	G	G		S	T							G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.
Predicted Secondary structure												.	.																																																												.
Query SS confidence												.	.																																																												.
Query Sequence		E	G	M	L	V	T	M	P	K	R	.	.	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	D	E	P	L	A	L	V	K	D	L	K	A	N	G	.	A	N	T	V	I	G	P	L
Query Conservation												.	.																																																												.
Alig confidence												.	.																																																												.
Template Conservation
Template Sequence		E	G	L	L	F	T	T	H	Y	H	P	K	A	A	S	N	P	V	A	K	K	F	V	E	V	Y	K	E	K	Y	G	K	E	P	A	A	L	N	A	L	G	Y	D	A	Y	X	V	L	L	D	A	I	E	R	A	G	S	F	D	R	E	K	I	A	E	E	I	R	K	T	R	N	F	N	G	A	S	G	I	I
Template Known Secondary structure		T	T						S			G	G	G			S															S	S																								T	S											T	T			S				T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T
Query Conservation
Alig confidence											.										.
Template Conservation											.										.
Template Sequence		N	I	D	E	N	G	D	A	I	.	K	S	V	V	V	N	I	V	K	.	N	G	S	V	D
Template Known Secondary structure			B		T	T	S		B		.										.	T	T
Template Predicted Secondary structure											.										.
Template SS confidence
		337	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.		.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions