Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 16 Aligned Residues 337 % Identity 16% Template c3snrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris. Resolution 1.49 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	.	N	D	G	I	K	Y	V	I	G	H	L	C
Query Conservation																																																																					.
Alig confidence																																					.	.	.	.	.	.																											.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		T	N	E	I	T	V	G	I	S	V	T	T	T	G	P	A	A	A	L	G	I	P	E	R	N	A	L	E	F	V	V	K	E	I	S	.	.	.	.	.	.	G	H	P	I	K	I	I	V	L	D	D	G	G	D	P	T	A	A	T	T	N	A	R	R	F	V	T	E	S	K	A	D	V	I	X	G	S	S	V
Template Known Secondary structure														S	S	T	T										G	G	G	G	S		S			T	.	.	.	.	.	.	T											T	T															T	S			S						S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V
Query Conservation
Alig confidence																														.	.																									.
Template Conservation																														.	.																									.
Template Sequence		T	P	P	S	V	A	I	S	N	V	A	N	E	A	Q	I	P	H	I	A	L	A	P	L	P	I	T	P	.	.	E	R	A	K	W	S	V	V	X	P	Q	P	I	P	I	X	G	K	V	L	Y	E	H	X	.	K	K	N	N	V	K	T	V	G	Y	I	G	Y	S	D	S	Y	G	D	L	W	F	N	D	L
Template Known Secondary structure																T						S	S						T	.	.	T	T	T	T	T					S															.			T	T										S	S
Template Predicted Secondary structure																														.	.																									.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	Q	G	E	A	X	G	L	K	I	V	G	E	E	R	F	A	R	P	D	T	S	V	A	G	Q	A	L	K	L	V	A	A	N	P	D	A	I	L	V	G	A	S	G	T	A	A	A	L	P	Q	T	T	L	R	E	R	G	Y	N	G	L	I	Y	Q	T	H	G	A	A	S	X	D	F	I	R	I	A	G
Template Known Secondary structure								T	T											T	T		S															S																					T	T			S						G	G	G		S								G
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.										.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																								.																						.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																								.																						.	.	.	.	.	.	.
Query Sequence		D	A	A	E	G	M	L	V	T	M	P	K	.	.	.	.	.	.	.	.	.	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	.	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	.	.	.	.	.	.	.	G	S	D	E	P	L	A
Query Conservation														.	.	.	.	.	.	.	.	.																								.																						.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																								.																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	A	E	G	V	L	X	A	S	G	P	V	X	D	P	E	G	Q	D	D	T	A	L	T	K	K	P	G	X	A	L	V	K	V	Y	E	E	K	Y	G	P	S	S	R	S	Q	F	A	G	H	S	Y	D	A	F	K	V	L	E	R	V	V	P	V	A	L	K	K	A	K	P	G	T	Q	E	F	R	E	A
Template Known Secondary structure		G	G	G	T	T							G	G	G		S	T	T	S		T	T		T	T																	T	T																													T	T	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																	.	.
Query SS confidence											.																	.	.
Query Sequence		L	V	K	D	L	K	A	N	G	.	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	.	.	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T	A	A	K
Query Conservation											.																	.	.
Alig confidence											.																	.	.												.
Template Conservation																																									.
Template Sequence		L	R	E	A	F	L	T	E	K	D	I	A	A	S	Q	G	V	Y	N	F	T	E	T	D	R	Y	G	L	D	D	R	S	R	I	L	L	T	V	K	.	N	G	K	Y	V	I	V	K
Template Known Secondary structure															S	S							S	S		S	S				G	G	G								.	T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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