Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 22 Aligned Residues 345 % Identity 19% Template c3sm9A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 3; PDBTitle: crystal structure of metabotropic glutamate receptor 3 precursor in2 presence of ly341495 antagonist Resolution 2.26 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.										.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																	.	.	.	.	.	.	.	.	.																											.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	.	.	.	.	.	.	.	.	.	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	.	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G
Query Conservation																	.	.	.	.	.	.	.	.	.																											.
Alig confidence																	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		E	G	D	L	V	L	G	G	L	F	P	I	N	E	K	G	T	T	E	E	C	G	R	I	N	E	D	R	G	I	Q	R	L	E	A	M	L	F	A	I	D	E	I	N	K	D	D	Y	L	L	P	G	V	K	L	G	V	H	I	L	D	T	C	S	R	D	T	Y	A	L	E	Q	S	L	E	F	V	R	A	S
Template Known Secondary structure				S																	S						T	T	T	T																		S	S	S	S	T	T											T	T															T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
				93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																									.
Query SS confidence		.	.																																									.
Query Sequence		.	.	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	.	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D
Query Conservation		.	.																																									.
Alig confidence		.	.																																									.																						.
Template Conservation																																																																		.
Template Sequence		L	L	I	A	G	V	I	G	G	S	Y	S	S	V	S	I	Q	V	A	N	L	L	R	L	F	Q	I	P	Q	I	S	Y	A	S	T	S	A	K	L	S	D	K	S	R	Y	D	Y	F	A	R	T	V	P	P	D	F	Y	Q	A	K	A	M	A	E	.	I	L	R	F	F	N	W	T	Y	V	S	T	V	A	S
Template Known Secondary structure											S	S												G	G	G	T						S	S				G	G	G	G		T	T	T	T	T	T				S	S			T										.					T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	.	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		E	G	D	Y	G	E	T	G	I	E	A	F	E	Q	E	A	R	L	R	N	I	S	I	A	T	A	E	K	V	G	R	I	R	K	S	Y	D	S	V	I	R	E	L	L	Q	K	P	N	A	R	V	V	V	L	F	M	R	S	D	D	S	R	E	L	I	A	A	A	S	R	A	N	A	S	F	T	W	V	A	S
Template Known Secondary structure		S	S																T	T	T																									T		T	T																							T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		249	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.															.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																					.
Predicted Secondary structure						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	V	G	.	N	A	S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K
Query Conservation						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	W	G	A	Q	E	S	I	I	K	G	S	E	H	V	A	Y	G	A	I	T	L	E	L	A	S	Q	P	V	R	Q	F	D	R	Y	F	Q	S	L	N	P	Y	N	N	H	R	N	P	W	F	R	D	F	W	E	Q	K	F	Q	C	S	L	Q	N	H	R	R	V	C	D	K	H	L	A	I	D	S	S	N
Template Known Secondary structure		T	T	T	T	T						T	T		T	T	T	T	T	T																				T			T	T	T		T	T		T	T										T		B					S		B			T	T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.																	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query Sequence		D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	.	.	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.											.
Template Conservation																																																																													.
Template Sequence		Y	E	Q	E	S	K	I	M	F	V	V	N	A	V	Y	A	M	A	H	A	L	H	K	M	Q	R	T	L	C	P	N	T	T	K	L	C	D	A	M	K	I	L	D	G	K	K	L	Y	K	D	Y	L	L	K	I	N	F	T	A	P	F	N	D	S	I	V	K	F	D	T	F	G	D	G	M	.	G	R	Y	N
Template Known Secondary structure						T	T																							S	T	T		S	S							S										T	G	G	G						T	T									T	T		B			.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.
		356	.	.	.	360		.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		V	F	Q	W	H	.	A	D	G	S	S	T	A	A	K
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		V	F	N	F	Q	N	V	G	G	K	Y	S	Y	L	K
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions