Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 17 Aligned Residues 336 % Identity 17% Template c3sg0A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 Resolution 1.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	.	G	I	K	Y	V	I	G	H	L	C
Query Conservation																																																																							.
Alig confidence																																					.	.	.	.	.	.																													.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		Q	A	E	I	K	I	G	I	T	X	S	A	S	G	P	G	A	A	L	G	Q	P	Q	S	K	T	V	A	A	L	P	K	E	I	G	.	.	.	.	.	.	G	E	K	V	T	Y	F	A	L	D	D	E	S	D	P	T	K	A	A	Q	N	A	R	K	L	L	S	E	E	K	V	D	V	L	I	G	S	S	L
Template Known Secondary structure														S	S	T	T											G	G	G	S		S			T	.	.	.	.	.	.	T											T	T															T	S			S						S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.							.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	.	.	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R
Query Conservation																															.	.
Alig confidence																															.	.																										.
Template Conservation																																																										.
Template Sequence		T	P	V	S	L	P	L	I	D	I	A	A	E	A	K	T	P	L	X	T	X	A	A	A	A	I	L	V	A	P	X	D	E	R	R	K	W	V	Y	K	V	V	P	N	D	D	I	X	A	E	A	I	G	K	Y	I	.	A	K	T	G	A	K	K	V	G	Y	I	G	F	S	D	A	Y	G	E	G	Y	Y	K
Template Known Secondary structure															T	T										G	G	G	T		S			T	T	G	G	G					S															.			T	T										S	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	A	A	A	A	P	K	L	G	F	E	L	T	T	H	E	V	Y	A	R	S	D	A	S	V	T	G	Q	V	L	K	I	I	A	T	K	P	D	A	V	F	I	A	S	A	G	T	P	A	V	L	P	Q	K	A	L	R	E	R	G	F	K	G	A	I	Y	Q	T	H	G	V	A	T	E	E	F	I	K	L
Template Known Secondary structure											T											T	T		S												T			S								S	G	G	G										T	T			S						G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.										.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.								320	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																.																											.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.																.																											.	.	.	.	.	.	.
Query Sequence		A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	.	.	.	.	.	.	.	.	.	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	.	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	.	.	.	.	.	.	.	D	E	P
Query Conservation																					.	.	.	.	.	.	.	.	.																.																											.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.																.																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	K	D	V	E	G	A	I	F	A	G	E	A	F	S	G	A	E	D	X	P	A	D	S	P	F	R	K	V	K	A	R	F	V	D	A	Y	K	A	A	N	G	G	A	A	P	T	I	F	G	V	H	L	W	D	S	X	T	L	V	E	N	A	I	P	A	A	L	K	A	A	K	P	G	T	P	E	F	R
Template Known Secondary structure			G	G	G	G	T	T											G	G	G	S		T	T																		T	T	T																														T	T	S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		L	A	L	V	K	D	L	K	A	N	G	.	.	.	.	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T	A
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																		.										.
Template Conservation																																		.										.
Template Sequence		A	A	I	R	D	Q	I	E	K	S	K	D	L	A	L	N	N	G	L	S	N	X	T	P	D	N	H	N	G	Y	D	E	.	R	S	A	F	L	I	E	I	R	.	D	G	A	F	R	L
Template Known Secondary structure									T	T			S				T	T							S	S		S	S				G	.	G	G								.	T	T
Template Predicted Secondary structure																																		.										.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.		.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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