Phyre 2 alignment of P04816 with c3sajB

Job Description P04816
Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012

Rank 27 Aligned Residues 324

% Identity 15% Template c3sajB_

PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence	A	M	A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L
Query Conservation
Alig confidence																		.	.	.	.	.	.																							.	.	.	.
Template Conservation																		.	.	.	.	.	.																							.	.	.	.
Template Sequence	A	M	P	N	N	I	Q	I	G	G	L	F	P	N	Q	Q	S	.	.	.	.	.	.	Q	E	H	A	A	F	R	F	A	L	S	Q	L	T	E	P	P	K	L	L	P	Q	.	.	.	.	I	D	I	V	N	I	S	D	S	F	E	M	T	Y	R	F	C	S	Q	F	S	K	G	V	Y	A	I	F	G	F	Y
Template Known Secondary structure				S									S	S	S	S		.	.	.	.	.	.												T			S	S	S						.	.	.	.						T	T																T		S
Template Predicted Secondary structure																		.	.	.	.	.	.																							.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.

	101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S
Query Conservation
Alig confidence																												.	.	.	.														.	.	.							.																		.
Template Conservation																												.	.	.	.														.	.	.							.																		.
Template Sequence	E	R	R	T	V	N	M	L	T	S	F	C	G	A	L	H	V	C	F	I	T	P	S	F	P	V	D	.	.	.	.	T	S	N	Q	F	V	L	Q	L	R	P	E	L	.	.	.	Q	E	A	L	I	S	.	I	I	D	H	Y	K	W	Q	T	F	V	Y	I	Y	D	A	D	.	R	G	L	S	V	L	Q	R
Template Known Secondary structure		T	T	T												T							S				S	.	.	.	.	S			T	T					S				.	.	.							.						T												.			T	T
Template Predicted Secondary structure																												.	.	.	.														.	.	.							.																		.
Template SS confidence
	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.

	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	.	.	F	M	G	P	E	G	V	G	N	A	S	L	S	N
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence	V	L	D	T	A	A	E	K	N	W	Q	V	T	A	V	N	I	L	T	T	T	E	E	G	Y	R	M	L	F	Q	D	L	E	K	K	K	E	R	L	V	V	V	D	C	E	S	E	R	L	N	A	I	L	G	Q	I	V	K	L	E	K	N	G	I	G	Y	H	Y	I	L	A	N	L	G	F	M	D	I	D	L
Template Known Secondary structure									T								T	T	T																S	S	S																						T	T		S	S	T	T								S	B	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	.	.	D	K	K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	K	F	K	E	S	G	A	N	V	T	G	F	Q	L	V	N	Y	T	D	T	I	P	A	R	I	M	Q	Q	W	R	T	S	D	S	R	D	K	R	P	K	Y	T	S	A	L	T	Y	D	G	V	K	V	M	A	E	A	F	Q	S	L	R	R	Q	R	I	D	I	S	R	R	G	N	A	G	D	C	L	A	N
Template Known Secondary structure	S	S	S	T	T	T	S											T	T	S																																													T								S				S			S
Template Predicted Secondary structure
Template SS confidence
	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure	.	.	.	.	.
Query SS confidence	.	.	.	.	.
Query Sequence	.	.	.	.	.	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G
Query Conservation	.	.	.	.	.
Alig confidence	.	.	.	.	.
Template Conservation
Template Sequence	P	A	V	P	W	G	Q	G	I	D	I	Q	R	A	L	Q	Q	V	R	F	E	G	L	T	G	N	V	Q	F	N	E	K	G	R	R	T	N	Y	T	L	H	V	I	E	M	K	H	D	G
Template Known Secondary structure	S					T	T										T						T	T					B		T	T	S	B	B		S										T	T
Template Predicted Secondary structure
Template SS confidence
	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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