Job Description P04816 Confidence 97.81% Date Wed Jan 25 15:20:10 GMT 2012 Rank 81 Aligned Residues 201 % Identity 8% Template c3qk7C_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 Resolution 2.70 Å

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		27	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	.	.	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S
Query Conservation													.	.
Alig confidence													.	.																			.	.	.	.	.	.	.																		.	.	.
Template Conservation																																	.	.	.	.	.	.	.																		.	.	.
Template Sequence		A	I	A	L	A	Y	P	S	R	P	R	V	L	N	N	S	T	F	L	E	X	I	S	W	I	G	I	E	L	G	K	.	.	.	.	.	.	.	R	G	L	D	L	L	L	I	P	D	E	P	G	E	K	Y	Q	.	.	.	S	L	I	H	L	V	E	T	R	R	V	D	A	L	I	V	A	H	T	Q	P	E
Template Known Secondary structure									S	S	S	G	G	G																		T	.	.	.	.	.	.	.	T	T										T	T					.	.	.								T	T			S						S			S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.								.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	.	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D
Query Conservation																																																																	.
Alig confidence											.															.	.	.	.	.	.																																		.
Template Conservation											.															.	.	.	.	.	.
Template Sequence		D	F	R	L	Q	Y	L	Q	K	.	Q	N	F	P	F	L	A	L	G	R	S	H	L	P	.	.	.	.	.	.	K	P	Y	A	W	F	D	F	D	N	H	A	G	A	S	L	A	V	K	R	L	L	E	L	G	H	Q	R	I	A	F	V	S	T	D	A	R	I	S	Y	V	D	Q	R	L	Q	G	Y	V	Q
Template Known Secondary structure											.	T	T							S					S	.	.	.	.	.	.	S																							T	T			S								S		S
Template Predicted Secondary structure											.															.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		184	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure									.	.																														.
Query SS confidence									.	.																														.
Query Sequence		G	L	K	A	A	N	A	.	.	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q
Query Conservation									.	.																														.
Alig confidence									.	.																														.
Template Conservation
Template Sequence		T	X	S	E	A	G	L	X	P	L	A	G	Y	L	Q	K	A	D	P	T	R	P	G	G	Y	L	A	A	S	R	L	L	A	L	E	V	P	P	T	A	I	I	T	D	C	N	X	L	G	D	G	V	A	S	A	L	D	K	A	G	L	L	G	G
Template Known Secondary structure						T	T					T	T							S	S													T	S	S	S			S					S	S															T		B	S	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions