Job Description P04816 Confidence 91.20% Date Wed Jan 25 15:20:10 GMT 2012 Rank 103 Aligned Residues 216 % Identity 15% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.																	.																.
Query SS confidence																																					.	.	.	.	.																	.																.
Query Sequence		D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	.	.	.	.	.	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	.	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	.	N	D	G	I	K	Y	V
Query Conservation																																					.	.	.	.	.																	.																.
Alig confidence													.	.	.	.																					.	.	.	.	.																	.																.
Template Conservation													.	.	.	.
Template Sequence		D	D	F	K	V	A	V	V	T	Q	P	.	.	.	.	L	S	E	N	K	V	Q	Y	N	X	V	E	E	X	A	K	E	Y	E	E	E	N	K	I	D	K	T	K	V	K	Q	T	I	K	H	V	V	L	P	E	N	F	T	S	N	I	D	S	A	I	N	K	I	V	K	L	A	D	D	K	E	V	Q	A	I
Template Known Secondary structure													.	.	.	.	T	T	T																			T	T																	T	T	G	G	G	G										G	G	G	G		T	T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	.	.	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G
Query Conservation																						.	.
Alig confidence																						.	.																						.
Template Conservation																																													.
Template Sequence		V	V	S	T	D	Q	A	G	L	L	P	A	L	Q	K	V	K	E	K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	V	.	N	L	G	V	S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	I	H	Y	A	S	T	D	D	L	K	D
Template Known Secondary structure						S	S															T	T	S					S	S			S									S	S		.																				T	T		S								T	T	G	G	G	S
Template Predicted Secondary structure																																													.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		175				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.										.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure			.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	G	L	A	R	S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	.	.	.	.	.	.	.	.	.	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K
Query Conservation			.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	I	A	K	R	L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V	Q	V	N	T	P	N	I	N	T	E	E	D	K	N	K	V	K	Q	F	L	N	E	D	I	E	K	Q	V	K	K	Y	G	K	D	I	N	V	F	G	V	N	E	Y	X	D	E	V	I	L	T	K	A	L	E	L	K	Y	I
Template Known Secondary structure																		T	T												S	S	T																							S							S	S																	B
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		243	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		275	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions