Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 29 Aligned Residues 323 % Identity 12% Template c3p3wC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:glutamate receptor 3; PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution Resolution 4.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	.	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C
Query Conservation																																																							.
Alig confidence																	.	.	.	.	.	.																					.	.											.
Template Conservation																	.	.	.	.	.	.																					.	.
Template Sequence		P	N	T	I	S	I	G	G	L	F	M	R	N	T	V	.	.	.	.	.	.	Q	E	H	S	A	F	R	F	A	V	Q	L	Y	N	T	N	Q	N	P	F	.	.	H	L	N	Y	H	V	D	H	L	D	S	S	N	S	F	S	V	T	N	A	F	C	S	Q	F	S	R	G	V	Y	A	I	F	G	F	Y	D
Template Known Secondary structure													S	S			.	.	.	.	.	.															S						.	.											S	S															T	T		S
Template Predicted Secondary structure																	.	.	.	.	.	.																					.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.							.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V
Query Conservation
Alig confidence																										.	.	.	.															.	.	.								.
Template Conservation																										.	.	.	.															.	.	.								.
Template Sequence		Q	M	S	M	N	T	L	T	S	F	C	G	A	L	H	T	S	F	V	T	P	S	F	P	.	.	.	.	T	D	A	D	V	Q	F	V	I	Q	M	R	P	A	.	.	.	L	K	G	A	I	L	S	.	L	L	S	Y	Y	K	W	E	K	F	V	Y	L	Y	D	T	E	R	G	F	S	V	L	Q	A	I	M
Template Known Secondary structure		T	T	T											T	T						S	S			.	.	.	.		S	S			S	S					S			.	.	.								.					T	T										S	S	S		S
Template Predicted Secondary structure																										.	.	.	.															.	.	.								.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	V	Q	N	N	W	Q	V	T	A	R	S	V	G	N	I	K	D	V	Q	E	F	R	R	I	I	E	E	M	D	R	R	Q	E	K	R	Y	L	I	D	C	E	V	E	R	I	N	T	I	L	E	Q	V	K	H	S	R	G	Y	H	Y	M	L	A	N	L	G	F	T	D	I	L	L	E	R	V	M	H
Template Known Secondary structure					T	T	T	T									S	S			S	T	T										T	T	T	T																			T					T	T								S			T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.									.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.															.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	.	.	.	.	.	.	.	.	K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Query Conservation																																	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																														.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	G	G	A	N	I	T	G	F	Q	I	V	N	N	E	N	P	M	V	Q	Q	F	I	Q	R	W	V	R	L	D	E	R	E	F	P	E	A	K	N	A	P	L	K	Y	T	S	A	L	T	H	D	A	I	L	V	I	A	E	A	F	R	Y	L	R	R	Q	R	V	D	V	S	G	D	C	L	A	N	P	A
Template Known Secondary structure		.	.	T	T											T	T												S	S	S		T	T	T	S	T	T	S	S	S	S																										T	T									S	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	G	I	D	I	E	R	A	L	K	M	V	Q	V	Q	G	M	T	G	N	I	Q	F	D	T	Y	G	R	R	T	N	Y	T	I	D	V	Y	E	M	K	V	S	G
Template Known Secondary structure												T	T						T	T							T	T	S				S										S	S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions