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Job DescriptionP04816
Confidence98.16%DateWed Jan 25 15:20:10 GMT 2012
Rank66Aligned Residues217
% Identity10%Templatec3o74A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQ
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Template Sequence  TLGFILP. . DLENPSYARIAKQLEQGARA. . . . . . . . . RGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPED
Template Known Secondary structure  S..
TT
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TT
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   63...... 70.........80......... 90.........100.........110.........120.........130.
 
   107..110.........120.........130.........140.........150.........160......... 170.........180.....
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Query Sequence  PASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHD. KQQYGEGLARSVQDGL
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Template Sequence  DSYRELQDKGLPVIAIDRRLDP. . . . . . AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL
Template Known Secondary structure 
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T......TT

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   132.......140.........150... ......160.........170.........180.........190.........200.....
 
   186...190.........200.........210..... ....220.........230.........240.........250.........260
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Query Sequence  KAANANVVFFDGITAGEKDFSALIARLKKE. . NIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIA
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Template Sequence  QGYTGEVRRYQGEAFSRECGQRLXQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFGDNQLLDFL
Template Known Secondary structure  TT

SSSSSTS

SSSTS
GGG


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   206...210.........220.........230.........240.........250.........260.........270.........280..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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