Job Description P04816 Confidence 99.20% Date Wed Jan 25 15:20:10 GMT 2012 Rank 35 Aligned Residues 260 % Identity 10% Template c3o1hB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao Resolution 3.10 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S
Query Conservation
Alig confidence											.								.														.	.	.	.	.	.	.
Template Conservation											.								.														.	.	.	.	.	.	.
Template Sequence		D	E	K	I	C	A	I	Y	P	.	H	L	K	D	S	Y	W	.	L	S	V	N	Y	G	M	V	S	E	A	E	K	.	.	.	.	.	.	.	Q	G	V	N	L	R	V	L	E	A	G	G	Y	P	N	K	S	R	Q	E	Q	Q	L	A	L	C	T	Q	W	G	A	N	A	I	I	L	G	T	V	D	P	H
Template Known Secondary structure										S	.				S				.														.	.	.	.	.	.	.	T	T									S	S	T	T															T	T		S							S	S	T	T
Template Predicted Secondary structure											.								.														.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	.	.	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q
Query Conservation																																																											.	.
Alig confidence																																																											.	.
Template Conservation
Template Sequence		A	Y	E	H	N	L	K	S	W	V	G	N	T	P	V	F	A	T	V	N	Q	L	D	L	D	E	E	Q	S	T	L	L	K	G	E	V	G	V	D	W	Y	W	M	G	Y	E	A	G	K	Y	L	A	E	R	H	P	K	G	S	G	K	T	N	I	A	L	L	L	G	P	R	T	K	P	V	T	T	G	F	Y
Template Known Secondary structure		T	T	T	T	T	T					T	T							S	S						T	T	T	T	T	S									T															S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G	D
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		E	A	I	K	N	S	D	I	H	I	V	D	S	F	W	A	D	N	D	K	E	L	Q	R	N	L	V	Q	R	V	I	D	M	G	N	I	D	Y	I	V	G	.	S	A	V	A	I	E	A	A	I	S	E	L	R	S	A	D	K	T	H	D	I	G	L	V	S	V	Y	L	S	H	G	V	Y	R	G	L	L	R
Template Known Secondary structure					S	S	S	S											S															T				S					.															T	S		T	T	T	S					S	S			T	T							T
Template Predicted Secondary structure																																											.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	G
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	N	K	V	L	F	A	P	T	D	K	M	V	Q	Q	G	R	L	S	V	M	Q	A	A	H	Y	L	R	H	Q	P	Y	E
Template Known Secondary structure		.	.	.	T	S			B																						T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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