Job Description P04816 Confidence 98.05% Date Wed Jan 25 15:20:10 GMT 2012 Rank 71 Aligned Residues 201 % Identity 12% Template c3mizB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli Resolution 1.91 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q
Query Conservation
Alig confidence														.																	.	.	.			.	.	.	.	.	.																																							.	.
Template Conservation														.																	.	.	.			.	.	.	.	.	.																																							.	.
Template Sequence		T	F	G	I	I	T	D	Y	V	S	T	T	.	P	Y	S	V	D	I	V	R	G	I	Q	D	W	A	N	A	.	.	.	N	G	.	.	.	.	.	.	K	T	I	L	I	A	N	T	G	G	S	S	E	R	E	V	E	I	W	K	X	F	Q	S	H	R	I	D	G	V	L	Y	V	T	X	Y	R	R	.	.
Template Known Secondary structure										S	S	S		.	S	S	S														.	.	.	T	T	.	.	.	.	.	.									T	T															T	T													.	.
Template Predicted Secondary structure														.																	.	.	.			.	.	.	.	.	.																																							.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.				.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	.	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D	G	L
Query Conservation																																																																	.
Alig confidence																				.	.	.	.	.																																									.
Template Conservation																				.	.	.	.	.
Template Sequence		I	V	D	P	E	S	G	D	V	S	I	P	T	V	X	I	N	C	.	.	.	.	.	R	P	Q	T	R	E	L	L	P	S	I	E	P	D	D	Y	Q	G	A	R	D	L	T	R	Y	L	L	E	R	G	H	R	R	I	G	Y	I	R	L	N	P	I	L	L	G	A	E	L	R	L	D	A	F	R	R	T	T
Template Known Secondary structure								T	T											.	.	.	.	.			S	S	T	T	S	S																					T	T			S								T	T
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																						.
Query SS confidence															.	.	.	.	.	.	.																						.
Query Sequence		K	A	A	N	A	N	V	V	F	F	D	G	I	.	.	.	.	.	.	.	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q
Query Conservation															.	.	.	.	.	.	.																						.
Alig confidence															.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		S	E	F	G	L	T	E	N	D	L	S	I	S	L	G	X	D	G	P	V	G	A	E	N	N	Y	V	F	A	A	A	T	E	X	L	K	Q	D	D	R	P	T	A	I	X	S	G	N	D	E	X	A	I	Q	I	Y	I	A	A	X	A	L	G	L	R	I	P
Template Known Secondary structure				T	T			G	G	G									S	S	T	T	S															S	T	T			S					S	S														T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions