Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 13 Aligned Residues 339 % Identity 17% Template c3lopA_ PDB info PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Resolution 1.55 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	.	N	D	G	I	K	Y	V	I	G	H	L	C	S	S
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		D	I	S	V	I	Q	S	L	P	L	S	G	S	Q	A	V	T	G	R	A	L	N	A	G	A	R	L	Y	F	D	W	L	N	L	N	G	G	I	N	G	E	T	I	R	L	V	A	R	D	D	E	Q	K	I	E	Q	T	V	R	N	V	R	D	X	A	R	V	D	N	P	V	A	L	L	T	V	V	G	T	A
Template Known Secondary structure											S	S	S	T	T																					T	T	T	B	T	T	B										T	T																S
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		104	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		S	T	Q	P	A	.	.	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V
Query Conservation							.	.
Alig confidence							.	.																						.	.																									.
Template Conservation																														.	.																									.
Template Sequence		N	V	E	A	L	X	R	E	G	V	L	A	E	A	R	L	P	L	V	G	P	A	T	G	A	S	S	X	.	.	T	T	D	P	L	V	F	P	I	K	A	S	Y	Q	Q	E	I	D	K	X	I	T	A	L	.	V	T	I	G	V	T	R	I	G	V	L	Y	Q	E	D	A	L	G	K	E	A	I	T	G	V
Template Known Secondary structure									T	T						T					S		S				G	G	G	.	.	G	S		T	T					S															.			T	T										T	T
Template Predicted Secondary structure																														.	.																									.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	T	L	K	A	H	A	L	A	I	T	A	X	A	S	Y	P	R	N	T	A	N	V	G	P	A	V	D	K	L	L	A	A	D	V	Q	A	I	F	L	G	A	T	A	E	P	A	A	Q	F	V	R	Q	Y	R	A	R	G	G	E	A	Q	L	L	G	L	S	S	I	D	P	G	I	L	Q	K	V	A	G
Template Known Secondary structure							T	T	T				S							T	T	S													S			S						S															T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																.	.	.	.																						.	.																									.
Query SS confidence																.	.	.	.																						.	.																									.
Query Sequence		D	A	A	E	G	M	L	V	T	M	P	K	R	Y	.	.	.	.	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	.	.	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	D	.	E	P	L	A	L	V	K	D	L	K	A	N	G	A
Query Conservation																.	.	.	.																						.	.																									.
Alig confidence																.	.	.	.																						.	.																									.
Template Conservation
Template Sequence		L	D	A	V	R	G	Y	S	L	A	L	V	X	P	N	P	G	K	S	V	N	P	V	I	R	E	F	N	R	A	R	A	A	V	G	A	K	D	V	D	L	S	F	R	A	V	E	G	F	V	A	A	K	V	L	A	E	A	I	R	R	A	G	P	K	P	T	R	E	Q	V	R	H	A	L	T	E	L	R	D
Template Known Secondary structure						T	T							S			T	T		T	T	S														T		T	T																										S	S												T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		335	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		N	T	V	I	G	.	.	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		Y	D	V	G	G	G	F	T	V	D	F	T	D	R	S	R	P	G	S	H	Y	I	E	L	G	V	V	G	P	N	G	L	V	I
Template Known Secondary structure				S	S	T	T						S	S	T	T	S		S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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