Job Description P04816 Confidence 98.38% Date Wed Jan 25 15:20:10 GMT 2012 Rank 57 Aligned Residues 207 % Identity 11% Template c3lftA_ PDB info PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a Resolution 1.35 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S
Query Conservation
Alig confidence													.	.	.																	.	.	.	.																																									.
Template Conservation													.	.	.																	.	.	.	.																																									.
Template Sequence		N	A	K	I	G	V	L	Q	F	V	S	.	.	.	H	P	S	L	D	L	I	Y	K	G	I	Q	D	G	L	A	.	.	.	.	E	E	G	Y	K	D	D	Q	V	K	I	D	F	X	N	S	E	G	D	Q	S	K	V	A	T	X	S	K	Q	L	V	A	N	G	N	D	L	V	V	G	.	I	A	T	P	A
Template Known Secondary structure											S		.	.	.																	.	.	.	.		T	T			G	G	G									T	T													T	T	S	S		S					.		S
Template Predicted Secondary structure													.	.	.																	.	.	.	.																																									.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																	.	.	.																																					.
Query SS confidence																																	.	.	.																																					.
Query Sequence		T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	.	.	.	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	.	Q	Y	G	E	G	L	A	R	S
Query Conservation																																	.	.	.																																					.
Alig confidence																																	.	.	.																																					.
Template Conservation
Template Sequence		A	Q	G	L	A	S	A	T	K	D	L	P	V	I	X	A	A	I	T	D	P	I	G	A	N	L	V	K	D	L	K	K	P	G	G	N	V	T	G	V	S	D	H	N	P	A	Q	Q	Q	V	E	L	I	K	A	L	T	P	N	V	K	T	I	G	A	L	Y	S	S	S	E	D	N	S	K	T	Q	V	E	E
Template Known Secondary structure										S	S	S						S		S		T	T	T	T	T	S		S		S	S				S	S																						T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q
Query Conservation																																									.
Alig confidence																			.	.	.	.	.																		.
Template Conservation																			.	.	.	.	.
Template Sequence		F	K	A	Y	A	E	K	A	G	L	T	V	E	T	F	A	V	.	.	.	.	.	P	S	T	N	E	I	A	S	T	V	T	V	X	T	S	K	V	D	A	I	W	V	P	I	D	N	T	I	A	S	G	F	P	T	V	V	S	S	N	Q	S	S	K
Template Known Secondary structure									T	T									.	.	.	.	.	S	S	G	G	G									T	T	T		S						S							T								T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions