Phyre 2 alignment of P04816 with c3kg2A

Job Description P04816
Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012

Rank 30 Aligned Residues 325

% Identity 12% Template c3kg2A_

PDB info PDB header:membrane protein, transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775

Resolution 3.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S
Query Conservation
Alig confidence														.	.	.	.	.	.																													.	.	.
Template Conservation														.	.	.	.	.	.																													.	.	.
Template Sequence	N	S	I	Q	I	G	G	L	F	P	R	G	A	.	.	.	.	.	.	D	Q	E	Y	S	A	F	R	V	G	M	V	Q	F	S	T	S	E	F	R	L	T	P	H	I	D	N	L	.	.	.	E	V	A	N	S	F	A	V	T	N	A	F	C	S	Q	F	S	R	G	V	Y	A	I	F	G	F	Y	D	K	K
Template Known Secondary structure											T	T		.	.	.	.	.	.														T			S	S											.	.	.		T	T															T	T		S								T	T
Template Predicted Secondary structure														.	.	.	.	.	.																													.	.	.
Template SS confidence
	10	.	.	.	.	.	.	.	.	.	20	.	.							.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D
Query Conservation
Alig confidence																									.	.	.	.													.	.	.								.															.
Template Conservation																									.	.	.	.													.	.	.								.															.
Template Sequence	S	V	N	T	I	T	S	F	C	G	T	L	H	V	S	F	I	T	P	S	F	P	T	D	.	.	.	.	G	T	H	P	F	V	I	Q	M	R	P	D	.	.	.	L	K	G	A	L	L	S	.	L	I	E	Y	Y	Q	W	D	K	F	A	Y	L	Y	.	D	S	D	R	G	L	S	T	L	Q	A	V	L	D
Template Known Secondary structure	T											T	T							S				S	.	.	.	.	S			S	S					S			.	.	.								.					T	T		S							.		G	G	G		T
Template Predicted Secondary structure																									.	.	.	.													.	.	.								.															.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																																															.	.
Query SS confidence																.	.	.	.																																															.	.
Query Sequence	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	.	.	.	.	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	.	.	F	M	G	P	E	G	V	G	N	A	S	L	S
Query Conservation																.	.	.	.																																															.	.
Alig confidence																.	.	.	.																																															.	.
Template Conservation
Template Sequence	S	A	A	E	K	K	W	Q	V	T	A	I	N	V	G	N	I	N	N	D	K	K	D	E	T	Y	R	S	L	F	Q	D	L	E	L	K	K	E	R	R	V	I	L	D	C	E	R	D	K	V	N	D	I	V	D	Q	V	I	T	I	G	K	H	V	K	G	Y	H	Y	I	I	A	N	L	G	F	T	D	G	D
Template Known Secondary structure					T	T									S	S			S	S	S	T	T	T	T	T	T	T					T	T	T	T	T																								T	T	T	B	T	T							S	S	B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.									.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	.	.	.	.	.	.	.	.	K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	L	K	I	Q	F	G	G	A	E	V	S	G	F	Q	I	V	D	Y	D	D	S	L	V	S	K	F	I	E	R	W	S	T	L	E	E	K	E	Y	P	G	A	H	T	A	T	I	K	Y	T	S	A	L	T	Y	D	A	V	Q	V	M	T	E	A	F	R	N	L	R	K	Q	R	I	E	I	S	R	R	G	N
Template Known Secondary structure		S	S	S	S	S	S	B								S	S		T	T	S											T	T	S		T	T	T	S	T	T			S	S																									T	T	T						S	S
Template Predicted Secondary structure
Template SS confidence
	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

													320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	G	D	C	L	A	N	P	A	V	P	W	G	Q	G	V	E	I	E	R	A	L	K	Q	V	Q	V	E	G	L	S	G	N	I	K	F	D	Q	N	G	K	R	I	N	Y	T	I	N	I	M	E	L	K	T	N	G	P	R	K
Template Known Secondary structure				T	T		S	S					T										T	T						T	T					B		S	S	S		B		S										S	S
Template Predicted Secondary structure
Template SS confidence
	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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