Job Description P04816 Confidence 99.96% Date Wed Jan 25 15:20:10 GMT 2012 Rank 34 Aligned Residues 307 % Identity 13% Template c3jpyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2; PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b Resolution 3.21 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.
Predicted Secondary structure																																																	.	.	.																						.	.	.	.
Query SS confidence																																																	.	.	.																						.	.	.	.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	.	.	.	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	.	.	.	.	D	G	I	K	Y
Query Conservation																																																	.	.	.																						.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																						.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	S	I	G	I	A	V	I	L	V	G	T	S	D	.	.	.	.	.	.	.	.	.	.	.	.	E	V	A	I	K	D	A	H	E	K	D	D	F	H	H	L	S	V	V	P	R	V	E	L	V	A	M	N	E	T	D	P	K	S	I	I	T	R	I	C	D	L	M	S	D	R	K	I	Q	G	V	V	F
Template Known Secondary structure													S			S	.	.	.	.	.	.	.	.	.	.	.	.							S	S	S				S	T	T		S	S										S			S															S			S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.													.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		V	I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	.	.	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y
Query Conservation																																								.	.
Alig confidence																																								.	.																					.
Template Conservation																																																														.
Template Sequence		A	D	D	T	D	Q	E	A	I	A	Q	I	L	D	F	I	S	A	Q	T	L	T	P	I	L	G	I	H	G	G	S	S	M	I	M	A	D	K	D	E	S	S	M	F	F	Q	F	G	P	S	I	E	Q	Q	A	S	V	M	L	N	.	I	M	E	E	Y	D	W	Y	I	F	S	I	V	T	T	Y	F	P	G
Template Known Secondary structure					S			T													T	T								S	G	G	G	S				S			T	T						S	S													.					T	T										S	S	T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		G	E	G	L	A	R	S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	.	.	F	M	G	P	E	G	V
Query Conservation																																																																									.	.
Alig confidence																																	.	.																																							.	.
Template Conservation																																	.	.
Template Sequence		Y	Q	D	F	V	N	K	I	R	S	T	I	E	N	S	F	V	G	W	E	L	E	E	V	L	L	L	D	M	S	S	.	.	K	I	Q	N	Q	L	K	K	L	Q	S	P	I	I	L	L	Y	C	T	K	E	E	A	T	Y	I	F	E	V	A	N	S	V	G	L	T	G	Y	G	Y	T	W	I	V	P	S	L
Template Known Secondary structure															T		S	S															.	.	T						T	T				S						S														T	T	T		S	S	S	S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	A	S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	G	D	T	D	T	V	P	S	E	F	P	T	G	L	I	S	V	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	W	D	Y	G	L	P	A	R	V	R	D	G	I	A	I	I	T	T	A	A	S	D	M	L	S	E	H	S	F	I	P	E	P	K	S	S	C
Template Known Secondary structure					S	T	T				T	T	S		S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S																								S	S									S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
								318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	S	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																				.	.
Template Conservation																											.	.
Template Sequence		Y	N	T	H	E	K	R	I	Y	Q	S	N	M	L	N	R	Y	L	I	N	V	T	F	E	G	.	.	R	D	L	S	F	S	E	D	G	Y	Q	M	H	P	K	L	V	I	I	L	L	N	K	E	R	K	W	E
Template Known Secondary structure		S	S																	T	T				T	T	.	.					B		T	T	S	B	B	S	S										S	S	S
Template Predicted Secondary structure																											.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions