Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 5 Aligned Residues 339 % Identity 21% Template c3hutA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum Resolution 1.93 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	.	G	I	K	Y	V	I	G	H	L	C	S	S
Query Conservation																																																																					.
Alig confidence																																																																					.
Template Conservation
Template Sequence		A	L	L	L	G	Y	E	L	P	L	T	G	A	N	A	A	Y	G	R	V	F	Q	E	A	A	R	L	Q	L	D	R	F	N	A	A	G	G	V	G	G	R	P	V	D	I	L	Y	A	D	S	R	D	D	A	D	Q	A	R	T	I	A	R	A	F	V	D	D	P	R	V	V	G	V	L	G	D	F	S	S	T
Template Known Secondary structure											S	S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D
Query Conservation
Alig confidence																																.																									.
Template Conservation																																.																									.
Template Sequence		V	S	X	A	A	G	S	I	Y	G	K	E	G	X	P	Q	L	S	P	T	A	A	H	P	D	Y	I	K	I	S	.	P	W	Q	F	R	A	I	T	T	P	A	F	E	G	P	N	N	A	A	W	X	I	G	D	.	G	F	T	S	V	A	V	I	G	V	T	T	D	W	G	L	S	S	A	Q	A	F	R	K
Template Known Secondary structure														T						S	S				G	G	G	T	T	S		.	T	T				S	S			G	G	G												T	.	T										S	S
Template Predicted Secondary structure																																.																									.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	E	L	R	G	G	A	V	V	V	N	E	E	V	P	P	G	N	R	R	F	D	D	V	I	D	E	I	E	D	E	A	P	Q	A	I	Y	L	A	X	A	Y	E	D	A	A	P	F	L	R	A	L	R	A	R	G	S	A	L	P	V	Y	G	S	S	A	L	Y	S	P	K	F	I	D	L	G	G	P	A
Template Known Secondary structure						T	T											T	T																	S						S															T	T									G	G	G		S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340
Predicted Secondary structure														.																																														.													.
Query SS confidence														.																																														.													.
Query Sequence		A	E	G	M	L	V	T	M	P	K	R	Y	.	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	D	.	E	P	L	A	L	V	K	D	L	K	A	N	.	G	A	N	T	V	I	G	P
Query Conservation														.																																														.													.
Alig confidence														.																																														.													.
Template Conservation
Template Sequence		V	E	G	V	R	L	A	T	A	F	V	L	G	A	S	D	P	V	V	V	E	F	V	S	A	Y	E	T	L	Y	G	A	I	P	T	L	F	A	A	H	G	Y	D	A	V	G	I	X	L	A	A	V	G	R	A	G	P	E	V	T	R	E	S	L	R	D	A	L	A	A	T	D	R	Y	A	G	V	T	G	I
Template Known Secondary structure		G	T	T						S			T	T			S															S	S																									T	T												T			S				T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		T	R	F	D	P	E	T	R	E	T	T	K	I	L	T	R	L	V	V	.	R	E	G	D	F	R
Template Known Secondary structure						T	T	T													.		T	T
Template Predicted Secondary structure																					.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions