Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 24 Aligned Residues 337 % Identity 14% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																								.													.
Query SS confidence																																								.													.
Query Sequence		I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	.	G	D	K	L	V	G	V	E	Y	D	D	A	.	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S
Query Conservation																																								.													.
Alig confidence																.	.																							.													.
Template Conservation																.	.
Template Sequence		L	R	F	G	G	I	F	E	Y	V	E	S	G	P	.	.	M	G	A	E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	G	P	S	H	S	S
Template Known Secondary structure												T	T	S	S	.	.																			S	S	S	S	S	S												T	T																		S						S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D
Query Conservation
Alig confidence																															.																							.																.
Template Conservation																															.																							.																.
Template Sequence		S	A	N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	N	K	.	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	.	Q	F	F	K	W	K	T	V	T	V	V	Y	D	D	S	.	T	G	L	I	R	L	Q	E	L	I	K
Template Known Secondary structure													T	T			B				S						S	S			.			S					S	B		T	T	T										.			T	T		S							S	S	T	.						S					T
Template Predicted Secondary structure																															.																							.																.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	.	.	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G
Query Conservation																																																															.	.
Alig confidence												.																																																			.	.
Template Conservation												.
Template Sequence		A	P	S	R	Y	N	L	R	L	K	.	I	R	Q	L	P	A	D	T	K	D	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F	T	T	L	D	L	F	A	L	D	V	E	P	Y
Template Known Secondary structure		G	G	G	T	S	S					.						S	S	G	G	G											T	T								S																T			S	T	T								S		G	G	G	B			T	T	T
Template Predicted Secondary structure												.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.								.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	.	.	.	.	.	.	.	K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	D	E	P	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	S	G	V	N	M	T	G	F	R	I	L	N	T	E	N	T	Q	V	S	S	I	I	E	K	W	S	M	E	R	L	P	D	S	G	L	L	D	G	F	M	T	T	D	A	A	L	M	Y	D	A	V	H	V	V	S	V	A	V	Q	Q	F	P	Q	M	T	V	S	S	L	Q	C	N	R	H	K	P	W	R
Template Known Secondary structure		T	T	T	T									S		T	T	S												T	T				T	T		B		S	S																					T	T		T	T								S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
				323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																								.
Query SS confidence		.	.																								.
Query Sequence		.	.	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	.	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H	A	D	G	S	S	T	A	A
Query Conservation		.	.																								.
Alig confidence		.	.																								.
Template Conservation
Template Sequence		F	G	T	R	F	M	S	L	I	K	E	A	H	W	E	G	L	T	G	R	I	T	F	N	K	T	N	G	L	R	T	D	F	D	L	D	V	I	S	L	K	E	E	G	L	E	K	I	G
Template Known Secondary structure		S										T						T	T							T	T	T	S	S	B												T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions