Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 6 Aligned Residues 345 % Identity 19% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.
Predicted Secondary structure																																																													.													.
Query SS confidence																																																													.													.
Query Sequence		H	T	A	M	A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	.	P	K	Q	A	V	A	V	A	N	K	I	V	.	N	D	G	I	K	Y	V
Query Conservation																																																													.													.
Alig confidence																																																													.													.
Template Conservation
Template Sequence		Q	A	Q	S	S	D	P	V	V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L
Template Known Secondary structure						S	S											S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.								.	.	160	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	.	.	.	.	.	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	.	.	.	.	.	.	.	T	V	K	P	Q	R	I
Query Conservation																																			.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	G	Y	N	L	E	N	G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I
Template Known Secondary structure				S			S	S		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	.	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T
Query Conservation																																																														.
Alig confidence																																																														.
Template Conservation
Template Sequence		A	I	I	T	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K	L	R	A	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T	N	S
Template Known Secondary structure							S	S														G	G	G	G	T											S	S		S												S			S																				T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.																							.	.	.
Query SS confidence																																																								.																							.	.	.
Query Sequence		Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	G	.	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	.	.	.
Query Conservation																																																								.																							.	.	.
Alig confidence																																																								.																							.	.	.
Template Conservation
Template Sequence		L	V	Y	L	Q	Y	G	A	S	L	A	A	F	R	D	I	A	G	D	N	S	V	G	V	T	Y	A	T	V	L	G	T	L	Q	D	E	M	G	D	A	F	A	K	A	Y	K	E	R	Y	G	D	L	S	S	T	A	S	G	C	Q	T	Y	S	A	L	Y	A	Y	S	I	A	A	A	L	A	G	G	P	G	A
Template Known Secondary structure							S	G	G	G	S								G	G	G	G	T	T						S	S				S	S																T	T	S																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350													.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	.	.	.	.	.	.	.	.	.	.	.	.	G	F	D	F	G	V	F	Q	W	H	A	D	G
Query Conservation		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	D	D	V	Q	N	K	A	V	A	D	R	L	R	S	L	I	F	R	G	P	V	G	T	M	R	F	H	A	D	T	Q	S	A	W	S	Y	P	T	E	T	N	D	P	S	L	G	M	P	H	I	F	S	Q	I	F	D	K	A
Template Known Secondary structure		T	T																				T	T					B		T	T	T		B	B				T	T	T		S		T	T	S	S									S		T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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