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Job DescriptionP04816
Confidence98.17%DateWed Jan 25 15:20:10 GMT 2012
Rank64Aligned Residues253
% Identity10%Templatec3d02A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100.. ...
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Query Sequence  KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS. SST
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Template Sequence  TVVNISKVDG. . XPWFNRXGEGVVQAGKE. . . . . . . FNLNASQV. GPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVL
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   30......... 40.........50...... ...60.... .....70.........80.........90.........
 
   106...110.........120.........130.........140.........150.........160........ .170.........180..
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Query Sequence  QPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIH. . . DKQQYGEGLARSVQ
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Template Sequence  EPVFKKARDAGIVVLTNESPGQPS. . . . . ANWDVEIIDNEKFAAEYVEHXAKRXGGKGGYVIYVGSLTVPQHNLWADLLV
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   100.........110.........120... ......130.........140.........150.........160.........170....
 
   183......190.........200....... ..210......... 220.........230.........240.........250........
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Query Sequence  DGLKAANANVVFFDGITAGEKDFSA. . . LIARLKKENIDF. VYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSN
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Template Sequence  KYQKEHYPDXHEVTRRXPVAESVDDSRRTTLDLXKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGXXIPSQAAS
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   175....180.........190.........200.........210.........220.........230.........240.........250....
 
   259260.........270.........280.........290.......
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Query Sequence  IAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSG
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Template Sequence  LI. . . KSGDITEGITYDPATAGYALAAVASTLLNGKTIE
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   255. ...260.........270.........280.........290
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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