Job Description P04816 Confidence 97.91% Date Wed Jan 25 15:20:10 GMT 2012 Rank 78 Aligned Residues 196 % Identity 9% Template c2qu7B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.30 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q
Query Conservation
Alig confidence												.	.	.																	.	.	.			.	.	.	.	.	.
Template Conservation												.	.	.																	.	.	.			.	.	.	.	.	.
Template Sequence		I	I	A	F	I	V	P	D	Q	N	.	.	.	P	F	F	T	E	V	L	T	E	I	S	H	E	C	Q	K	.	.	.	H	H	.	.	.	.	.	.	L	H	V	A	V	A	S	S	E	E	N	E	D	K	Q	Q	D	L	I	E	T	F	V	S	Q	N	V	S	A	I	I	L	V	P	V	K	S	K	F	Q
Template Known Secondary structure								S	S			.	.	.															G	G	.	.	.	G	T	.	.	.	.	.	.									T	T															T	T									S	S	S	S
Template Predicted Secondary structure												.	.	.																	.	.	.			.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.				.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	.	G	E	G	L	A	R	S	V	Q	D	G	L
Query Conservation																																																																					.
Alig confidence				.	.	.													.	.	.	.	.	.																																													.
Template Conservation				.	.	.													.	.	.	.	.	.
Template Sequence		M	K	.	.	.	R	E	W	L	K	I	P	I	M	T	L	D	.	.	.	.	.	.	R	E	L	E	S	T	S	L	P	S	I	T	V	D	N	E	E	A	A	Y	I	A	T	K	R	V	L	E	S	T	C	K	E	V	G	L	L	L	A	N	P	N	I	S	T	T	I	G	R	K	N	G	Y	N	K	A	I
Template Known Secondary structure				.	.	.	G	G	G	T	T	S						S	.	.	.	.	.	.	S			T	T																							T	T	T			S								T	T	S
Template Predicted Secondary structure				.	.	.													.	.	.	.	.	.
Template SS confidence
		134	.				.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	.	.	.	.	.	.	.	.	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																		.
Template Conservation																																													.
Template Sequence		S	E	F	D	L	N	V	N	P	S	L	I	H	Y	S	D	Q	Q	L	G	T	N	A	Q	I	Y	S	G	Y	E	A	T	K	T	L	L	S	K	G	I	K	G	I	.	V	A	T	N	H	L	L	L	L	G	A	L	Q	A	I	K	E	S	E	K	E	I	K
Template Known Secondary structure				T	T					G	G	G						S	S		S																		T	T					.				S														S	S			B	T
Template Predicted Secondary structure																																													.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions