Job Description P04816 Confidence 97.52% Date Wed Jan 25 15:20:10 GMT 2012 Rank 90 Aligned Residues 217 % Identity 11% Template c2o20H_ PDB info PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis Resolution 1.90 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q
Query Conservation
Alig confidence									.	.																					.	.	.	.	.	.	.	.	.
Template Conservation									.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		T	V	G	V	I	L	P	.	.	T	I	T	S	T	Y	F	A	A	I	T	R	G	V	D	D	I	A	S	M	.	.	.	.	.	.	.	.	.	Y	K	Y	N	M	I	L	A	N	S	D	N	D	V	E	K	E	E	K	V	L	E	T	F	L	S	K	Q	V	D	G	I	V	Y	M	G	S	S	L	D	E	K
Template Known Secondary structure								S	.	.		T	T																		.	.	.	.	.	.	.	.	.	T	T									T	T															T	T		S						S	S
Template Predicted Secondary structure									.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.										.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	.	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D	G	L
Query Conservation																																																																	.
Alig confidence																		.	.	.	.	.	.	.																																									.
Template Conservation																		.	.	.	.	.	.	.
Template Sequence		I	R	T	S	L	K	N	S	R	T	P	V	V	L	V	G	.	.	.	.	.	.	.	T	I	D	G	D	K	E	I	P	S	V	N	I	D	Y	H	L	A	A	Y	Q	S	T	K	K	L	I	D	S	G	N	K	K	I	A	Y	I	M	G	S	L	K	D	V	E	N	T	E	R	M	V	G	Y	Q	E	A	L
Template Known Secondary structure										T							S	.	.	.	.	.	.	.				S	S	S		S																					T	T		S	S						S		T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		186	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		K	A	A	N	A	N	V	.	.	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		L	E	A	N	I	E	F	D	E	N	L	V	F	E	G	N	Y	S	Y	E	Q	G	K	A	L	A	E	R	L	L	E	R	G	A	T	S	A	V	V	S	H	D	T	V	A	V	G	L	L	S	A	M	M	D	K	G	V	K	V	P	E	D	F	E	I	I	S	G	A	N	S	P	I	T	Q	Y	T	Y
Template Known Secondary structure				T	T					G	G	G				S			S						T	T							T	T		S					S	S															T			T	T	T	T						S	S			G	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions