Job Description P04816 Confidence 98.11% Date Wed Jan 25 15:20:10 GMT 2012 Rank 68 Aligned Residues 215 % Identity 11% Template c2ioyB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Resolution 1.90 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	.	S	S	T
Query Conservation																																																																														.
Alig confidence									.	.																							.	.	.	.	.	.	.	.	.																																					.
Template Conservation									.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		T	I	G	L	V	I	S	.	.	T	L	N	N	P	F	F	V	T	L	K	N	G	A	E	E	K	A	K	E	L	G	.	.	.	.	.	.	.	.	.	Y	K	I	I	V	E	D	S	Q	N	D	S	S	K	E	L	S	N	V	E	D	L	I	Q	Q	K	V	D	V	L	L	I	N	P	V	D	S	D	A	V
Template Known Secondary structure								S	.	.		S	S	S																		T	.	.	.	.	.	.	.	.	.									T	T															T	T		S							S	S	T	T	T
Template Predicted Secondary structure									.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.										.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	.	.	.	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q
Query Conservation																																																																.	.	.
Alig confidence																										.	.	.	.	.																																		.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		V	T	A	I	K	E	A	N	S	K	N	I	P	V	I	T	I	D	R	S	A	N	G	G	.	.	.	.	.	D	V	V	C	H	I	A	S	D	N	V	K	G	G	E	M	A	A	E	F	I	A	K	A	L	K	G	K	G	N	V	V	E	L	E	G	I	P	G	A	S	A	A	R	D	R	G	K	G	F	D
Template Known Secondary structure											T	T							S	S			S	S	S	.	.	.	.	.			S																						T	T	T											T	T
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																						.																		.
Query SS confidence																						.																		.
Query Sequence		D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	.	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S
Query Conservation																						.																		.
Alig confidence																						.																		.
Template Conservation
Template Sequence		E	A	I	A	K	Y	P	D	I	K	I	V	A	K	Q	A	A	D	F	D	R	S	K	G	L	S	V	M	E	N	I	L	Q	A	Q	P	K	I	D	A	V	F	A	Q	N	D	E	M	A	L	G	A	I	K	A	I	E	A	A	N	R	Q	G	I	I	V	V	G	F	D	G	T	E	D	A	L	K
Template Known Secondary structure					T	T		T	T										T	T																	S								S	S														T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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