Job Description P04816 Confidence 95.02% Date Wed Jan 25 15:20:10 GMT 2012 Rank 101 Aligned Residues 183 % Identity 13% Template c2h0aA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus Resolution 2.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q
Query Conservation
Alig confidence													.	.																	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation													.	.																	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		T	V	S	V	L	L	P	F	V	A	T	.	.	E	F	Y	R	R	L	V	E	G	I	E	G	V	L	L	E	.	.	.	.	.	.	.	Q	R	Y	D	L	A	L	F	P	I	L	S	L	A	R	.	.	.	.	.	.	.	.	.	.	.	L	K	Y	L	T	D	G	L	I	L	A	S	Y	D	L	T	.	.
Template Known Secondary structure										S			.	.															G	G	.	.	.	.	.	.	.	G	T										S				.	.	.	.	.	.	.	.	.	.	.						S						S					.	.
Template Predicted Secondary structure													.	.																	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.												.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	.	.	.	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D
Query Conservation																																																																.	.	.
Alig confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.																															.	.	.
Template Conservation		.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	R	L	P	T	E	R	P	V	V	L	V	D	A	Q	N	P	R	Y	D	.	.	.	.	.	.	.	.	S	V	Y	L	D	N	R	L	G	G	R	L	A	G	A	Y	L	A	R	F	P	G	P	I	F	A	I	A	V	E	E	E	P	D	R	R	T	V	F	A	E	R	M	A	G	F	Q	E
Template Known Secondary structure		.	.	.	.	.			S		S	S						S	S			T	T	S		.	.	.	.	.	.	.	.						S												T	T	S	S	S										S
Template Predicted Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
							138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.									.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		184	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure											.	.																												.
Query SS confidence											.	.																												.
Query Sequence		G	L	K	A	A	N	A	N	V	.	.	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	.	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q
Query Conservation											.	.																												.
Alig confidence											.	.																												.
Template Conservation
Template Sequence		A	L	K	E	A	G	R	P	F	S	P	D	R	L	Y	I	T	R	H	S	Q	E	G	G	R	L	A	L	R	H	F	L	E	K	A	S	P	P	L	N	V	F	A	G	A	D	Q	V	A	L	G	V	L	E	E	A	V	R	L	G	L	T	P	G
Template Known Secondary structure						T	T					G	G	G						S	S													T	T			S	S						S	S													T	T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions