Job Description P04816 Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012 Rank 26 Aligned Residues 340 % Identity 18% Template c2e4zA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 7; PDBTitle: crystal structure of the ligand-binding region of the group iii2 metabotropic glutamate receptor Resolution 3.30 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.											.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																													.																												.
Query SS confidence															.	.	.	.	.	.	.	.	.	.																													.																												.
Query Sequence		A	D	D	I	K	V	A	V	V	G	A	M	S	.	.	.	.	.	.	.	.	.	.	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G	G	I	K	.	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	.
Query Conservation															.	.	.	.	.	.	.	.	.	.																													.																												.
Alig confidence															.	.	.	.	.	.	.	.	.	.																													.																												.
Template Conservation
Template Sequence		E	G	D	V	T	L	G	G	L	F	P	V	H	A	K	G	P	S	G	V	P	C	G	D	I	K	R	E	N	G	I	H	R	L	E	A	M	L	Y	A	L	D	Q	I	N	S	D	P	N	L	L	P	N	V	T	L	G	A	R	I	L	D	T	C	S	R	D	T	Y	A	L	E	Q	S	L	T	F	V	Q	A
Template Known Secondary structure				S														S	S	S		S																											S	S	S	S	S	S											T	T									G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
							91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																											.
Query SS confidence		.	.	.	.	.																																											.
Query Sequence		.	.	.	.	.	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I	S	P	G	A	T	N	P	E	L	T	Q	R	.	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I
Query Conservation		.	.	.	.	.																																											.
Alig confidence		.	.	.	.	.																																											.																						.
Template Conservation																																																																							.
Template Sequence		L	I	Q	K	P	E	K	V	V	G	V	I	G	A	S	G	S	S	V	S	I	M	V	A	N	I	L	R	L	F	Q	I	P	Q	I	S	Y	A	S	T	A	P	E	L	S	D	D	R	R	Y	D	F	F	S	R	V	V	P	P	D	S	F	Q	A	Q	A	M	V	D	.	I	V	K	A	L	G	W	N	Y	V
Template Known Secondary structure		G														S	S								T	T					T	T						S	S				G	G	G	G		T	T	T	T	S	S				S	S													.					T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S	V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G	L	K	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	L	A	S	E	G	S	Y	G	E	K	G	V	E	S	F	T	Q	I	S	K	E	A	G	G	L	C	I	A	Q	S	V	R	I	P	T	I	D	F	D	R	I	I	K	Q	L	L	D	T	P	N	S	R	A	V	V	I	F	A	N	D	E	D	I	K	Q	I	L	A	A	A	K	R	A	D	Q	V	G	H
Template Known Secondary structure							S	S																	T	T																							T	T	S	T	T																							T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
				245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																															.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	A	L	K	A	D	K
Query Conservation		.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	W	V	G	S	D	S	W	G	S	K	I	N	P	L	H	Q	H	E	D	I	A	E	G	A	I	T	I	Q	P	K	R	A	T	V	E	G	F	D	A	Y	F	T	S	R	T	L	E	N	N	R	R	N	V	W	F	A	E	Y	W	E	E	N	F	N	C	K	K	C	T	G	Q	E	R	I	G	K	D	S
Template Known Secondary structure		S						T	T	T	T	T		S	G	G	G	S	S						T	T							S												T	T			T	T	T			S		T	T									T	T							S	G	G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.														.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		K	D	P	S	G	P	Y	V	W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	.	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																						.												.
Template Conservation																																																																										.
Template Sequence		N	Y	E	Q	E	G	K	V	Q	F	V	I	D	A	V	Y	A	M	A	H	A	L	H	H	M	N	K	D	L	C	Y	R	G	V	C	P	E	M	E	Q	A	G	G	K	K	L	L	K	Y	I	R	H	V	N	F	N	G	S	A	G	T	P	V	M	F	N	K	N	G	D	A	P	.	G	R	Y	D	I	F	Q
Template Known Secondary structure		S					T	T																										S	S		T	T	T	T	T	T										T	T						T	T	S							T	T	S	B			.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.
		359	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	A	D	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Q	T	T	N	T
Template Known Secondary structure					S	S	T
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions