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Job DescriptionP04816
Confidence96.59%DateWed Jan 25 15:20:10 GMT 2012
Rank97Aligned Residues203
% Identity8%Templatec1zvvA_
PDB info PDB header:transcription/dnaChain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex
Resolution2.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSS
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Template Sequence  KTTTVGVIIP. . DISNIFYAELARGIEDIASM. . . . . . . . . YKYNIILSNSDQNQDKQLHLLNNMLGKQVDGIIFMSGNV
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   5960........ .70.........80........ .90.........100.........110.........120.......
 
   104.....110.........120.........130.........140.........150.........160....... ..170.........180.
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Query Sequence  STQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAII. . HDKQQYGEGLARSV
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Template Sequence  TEEHVEELKKSPVPVVLAA. . . . . . . SIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY
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   128.130.........140...... ...150.........160.........170.........180.........190.........200
 
   182.......190.... .....200.........210......... 220.........230.........240....
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Query Sequence  QDGLKAANANVVF. . FDGITAGEKDFSALIARLKKENIDF. VYYGGYYPEMGQMLRQARSVGLKTQ
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Template Sequence  KRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVP
Template Known Secondary structure  T



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   201........210.........220.........230.........240.........250.........260......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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