Email l.a.kelley@imperial.ac.uk Description P28303 Date Thu Jan 5 11:44:36 GMT 2012 Unique Job ID 80465152c5f42c9e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mkuA_ 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 2 d2r6gf2 14.4 11 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 3 d1v54c_ 13.9 9 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 4 d1u94a2 11.9 29 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 5 c1wrgA_ 11.7 14 PDB header:membrane protein Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain; PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum 6 c2yvxD_ 10.8 13 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 7 d1xp8a2 10.5 14 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 8 d1ubea2 10.4 43 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 9 d2yvxa3 10.4 13 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 10 d1lghb_ 10.3 8 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 11 d1mo6a2 10.3 43 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 12 d2a5yb1 10.1 100 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CED-4 C-terminal domain-like 13 d1sg7a1 10.0 8 Fold:ChaB-like Superfamily:ChaB-like Family:ChaB-like 14 c1sg7A_ 10.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cation transport regulator chab; PDBTitle: nmr solution structure of the putative cation transport2 regulator chab 15 c3ipdB_ 9.5 10 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 16 d1jo5a_ 9.0 16 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 17 c2zqpY_ 8.8 10 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus 18 d2d5ba1 8.7 15 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 19 d2r6gg1 7.7 24 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 20 c1m57H_ 7.4 24 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 21 c1b9uA_ not modelled 7.3 10 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 22 c2k1aA_ not modelled 7.2 14 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 23 c2l35A_ not modelled 7.1 18 PDB header:protein binding Chain: A: PDB Molecule:dap12-nkg2c_tm; PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer 24 c1cdlG_ not modelled 7.0 17 PDB header:calcium-binding protein Chain: G: PDB Molecule:calcium/calmodulin-dependent protein kinase type PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex 25 c2o5gB_ not modelled 7.0 17 PDB header:metal binding protein Chain: B: PDB Molecule:smooth muscle myosin light chain kinase peptide; PDBTitle: calmodulin-smooth muscle light chain kinase peptide complex 26 c2ntxB_ not modelled 6.9 20 PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; 27 c1ygyA_ not modelled 6.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 28 c1z65A_ not modelled 6.9 63 PDB header:unknown function Chain: A: PDB Molecule:prion-like protein doppel; PDBTitle: mouse doppel 1-30 peptide 29 d2hqxa1 not modelled 6.8 30 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 30 c2hqxB_ not modelled 6.8 30 PDB header:transcription Chain: B: PDB Molecule:p100 co-activator tudor domain; PDBTitle: crystal structure of human p100 tudor domain conserved2 region 31 d3dtub2 not modelled 6.8 25 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 32 c3pnwX_ not modelled 6.8 13 PDB header:protein binding/immune system Chain: X: PDB Molecule:tudor domain-containing protein 3; PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab 33 c2eeyA_ not modelled 6.7 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis; PDBTitle: structure of gk0241 protein from geobacillus kaustophilus 34 c2eqkA_ not modelled 6.7 14 PDB header:transcription Chain: A: PDB Molecule:tudor domain-containing protein 4; PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4 35 d1nkzb_ not modelled 6.5 12 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 36 c2k9pA_ not modelled 6.4 18 PDB header:membrane protein Chain: A: PDB Molecule:pheromone alpha factor receptor; PDBTitle: structure of tm1_tm2 in lppg micelles 37 c2be6F_ not modelled 6.4 11 PDB header:membrane protein Chain: F: PDB Molecule:voltage-dependent l-type calcium channel alpha-1c subunit; PDBTitle: 2.0 a crystal structure of the cav1.2 iq domain-ca/cam complex 38 c1ql1A_ not modelled 6.4 24 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 39 d1u78a2 not modelled 6.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 40 d1mhna_ not modelled 6.2 18 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 41 d2hw4a1 not modelled 6.2 17 Fold:PHP14-like Superfamily:PHP14-like Family:Janus/Ocnus 42 c3gg9C_ not modelled 6.2 17 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase oxidoreductase protein; PDBTitle: crystal structure of putative d-3-phosphoglycerate dehydrogenase2 oxidoreductase from ralstonia solanacearum 43 c2hw4A_ not modelled 6.2 17 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 44 c2d9tA_ not modelled 6.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tudor domain-containing protein 3; PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse 45 c3egjA_ not modelled 6.1 25 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylglucosamine-6-phosphate deacetylase; PDBTitle: n-acetylglucosamine-6-phosphate deacetylase from vibrio cholerae. 46 d1rqga1 not modelled 6.0 13 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 47 d1uptb_ not modelled 6.0 19 Fold:GRIP domain Superfamily:GRIP domain Family:GRIP domain 48 d1u61a_ not modelled 5.9 19 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:RNase III catalytic domain-like 49 c1i97U_ not modelled 5.9 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of the 30s ribosomal subunit from thermus2 thermophilus in complex with tetracycline 50 c2kvvA_ not modelled 5.9 33 PDB header:hydrolase Chain: A: PDB Molecule:putative excisionase; PDBTitle: solution nmr of putative excisionase from klebsiella pneumoniae,2 northeast structural genomics consortium target target kpr49 51 c3ci9B_ not modelled 5.8 15 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 52 c2b2aA_ not modelled 5.8 8 PDB header:transferase Chain: A: PDB Molecule:telomerase reverse transcriptase; PDBTitle: crystal structure of the ten domain of the telomerase2 reverse transcriptase 53 c1qfqB_ not modelled 5.8 42 PDB header:transcription/rna Chain: B: PDB Molecule:36-mer n-terminal peptide of the n protein; PDBTitle: bacteriophage lambda n-protein-nutboxb-rna complex 54 c2fynH_ not modelled 5.8 19 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 55 c4a4fA_ not modelled 5.7 33 PDB header:rna binding protein Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30; PDBTitle: solution structure of spf30 tudor domain in complex with2 symmetrically dimethylated arginine 56 c1g5vA_ not modelled 5.7 18 PDB header:translation Chain: A: PDB Molecule:survival motor neuron protein 1; PDBTitle: solution structure of the tudor domain of the human smn2 protein 57 d1eysh2 not modelled 5.7 15 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 58 d1m56d_ not modelled 5.6 11 Fold:Single transmembrane helix Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV Family:Bacterial aa3 type cytochrome c oxidase subunit IV 59 c3mp7B_ not modelled 5.6 18 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase subunit sece; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 60 d1ik0a_ not modelled 5.6 21 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 61 c3s6n2_ not modelled 5.6 8 PDB header:splicing Chain: 2: PDB Molecule:survival of motor neuron protein-interacting protein 1; PDB Fragment:gemin2-binding domain; PDBTitle: crystal structure of the gemin2-binding domain of smn, gemin2 in2 complex with smd1/d2/f/e/g from human 62 c3txsC_ not modelled 5.6 21 PDB header:viral protein Chain: C: PDB Molecule:terminase dna packaging enzyme small subunit; PDBTitle: crystal structure of phage 44rr small terminase gp16 63 d3b60a2 not modelled 5.6 9 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 64 c2ow8v_ not modelled 5.5 33 PDB header:ribosome Chain: V: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. 65 c2dbqA_ not modelled 5.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:glyoxylate reductase; PDBTitle: crystal structure of glyoxylate reductase (ph0597) from pyrococcus2 horikoshii ot3, complexed with nadp (i41) 66 d2d9ta1 not modelled 5.5 13 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 67 c3kf9B_ not modelled 5.4 33 PDB header:cell cycle/calcium-binding protein Chain: B: PDB Molecule:myosin light chain kinase 2, skeletal/cardiac muscle; PDBTitle: crystal structure of the sdcen/skmlck complex 68 c2hydB_ not modelled 5.4 8 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 69 c3bbo2_ not modelled 5.4 15 PDB header:ribosome Chain: 2: PDB Molecule:ribosomal protein l32; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 70 d1d8ja_ not modelled 5.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:The central core domain of TFIIE beta 71 c2yggA_ not modelled 5.4 17 PDB header:metal binding protein/transport protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: complex of cambr and cam 72 c2uxbU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein thx; PDBTitle: crystal structure of an extended trna anticodon stem loop2 in complex with its cognate mrna gggu in the context of3 the thermus thermophilus 30s subunit. 73 c2uuaU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 complexed with a valine-asl with cmo5u in position 343 bound to an mrna with a guc-codon in the a-site and4 paromomycin. 74 d2gu3a1 not modelled 5.3 11 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:PepSY-like 75 c2j02U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 3 of 4)3 this file contains the 30s subunit, mrna, a-, p- and4 e-site trnas and paromomycin for molecule ii. 76 c1hnwV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with tetracycline 77 c1j5eV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit 78 c2uxcU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein thx; PDBTitle: crystal structure of an extended trna anticodon stem loop2 in complex with its cognate mrna ucgu in the context of3 the thermus thermophilus 30s subunit. 79 c3ficU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas and ef-2 tu.gdp.kirromycin ternary complex, fitted to a 6.4 a cryo-em map.3 this file contains the 30s subunit and the ligands 80 c1xmqV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of t6a37-asllysuuu aaa-mrna bound to the decoding2 center 81 c2uucU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 complexed with a valine-asl with cmo5u in position 343 bound to an mrna with a gua-codon in the a-site and4 paromomycin. 82 c2vqfU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: modified uridines with c5-methylene substituents at the2 first position of the trna anticodon stabilize u-g wobble3 pairing during decoding 83 c1ibkV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with the antibiotic paromomycin 84 c1hr0V_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of initiation factor if1 bound to the 30s2 ribosomal subunit 85 c1hnzV_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with hygromycin b 86 c1n32V_ not modelled 5.3 33 PDB header:ribosome Chain: V: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 bound to codon and near-cognate transfer rna anticodon3 stem-loop mismatched at the first codon position at the a4 site with paromomycin 87 c2uubU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 complexed with a valine-asl with cmo5u in position 343 bound to an mrna with a guu-codon in the a-site and4 paromomycin. 88 c3zvoU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of the hybrid state of ribosome in complex with2 the guanosine triphosphatase release factor 3 89 c3oi4U_ not modelled 5.3 33 PDB header:ribosome/antibiotic Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome complexed with2 telithromycin. this file contains the 30s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes. 90 c3oi2U_ not modelled 5.3 33 PDB header:ribosome/antibiotic Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome complexed with2 telithromycin. this file contains the 30s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes. 91 c3mr8U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: recognition of the amber stop codon by release factor rf1. this entry2 3mr8 contains 30s ribosomal subunit. the 50s ribosomal subunit can be3 found in pdb entry 3ms1. molecule b in the same asymmetric unit is4 deposited as 3mrz (50s) and 3ms0 (30s). 92 c2j00U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 1 of 4).3 this file contains the 30s subunit, mrna, a-, p- and4 e-site trnas and paromomycin for molecule i. 93 c2y12U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: the crystal structure of ef-tu and g24a-trna-trp bound to a2 near-cognate codon on the 70s ribosome 94 c2vqeU_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: modified uridines with c5-methylene substituents at the2 first position of the trna anticodon stabilize u-g wobble3 pairing during decoding 95 c3ms0U_ not modelled 5.3 33 PDB header:ribosome Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: recognition of the amber stop codon by release factor rf1. this entry2 3ms0 contains 30s ribosomal subunit. the 50s ribosomal subunit can be3 found in pdb entry 3mrz. molecule a in the same asymmetric unit is4 deposited as 3mr8 (30s) and 3ms1 (50s). 96 c1ar1B_ not modelled 5.3 25 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 97 c1qleB_ not modelled 5.3 25 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 98 c3ogeU_ not modelled 5.3 33 PDB header:ribosome/antibiotic Chain: U: PDB Molecule:30s ribosomal protein thx; PDBTitle: structure of the thermus thermophilus ribosome complexed with2 chloramphenicol. this file contains the 30s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes. 99 c1gixX_ not modelled 5.3 33 PDB header:ribosome Chain: X: PDB Molecule:30s ribosomal protein thx; PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this file,2 1gix, contains the 30s ribosome subunit, three trna, and mrna3 molecules. 50s ribosome subunit is in the file 1giy